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Bulk tissue cell type deconvolution with multi-subject single-cell expression reference
Wang, Xuran, Park, Jihwan, Susztak, Katalin, Zhang, Nancy R., Li, Mingyao
Published in Nature communications (22.01.2019)
Published in Nature communications (22.01.2019)
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Single-Cell RNA Sequencing Reveals Expanded Clones of Islet Antigen-Reactive CD4+ T Cells in Peripheral Blood of Subjects with Type 1 Diabetes
Cerosaletti, Karen, Barahmand-pour-Whitman, Fariba, Yang, Junbao, DeBerg, Hannah A, Dufort, Matthew J, Murray, Sara A, Israelsson, Elisabeth, Speake, Cate, Gersuk, Vivian H, Eddy, James A, Reijonen, Helena, Greenbaum, Carla J, Kwok, William W, Wambre, Erik, Prlic, Martin, Gottardo, Raphael, Nepom, Gerald T, Linsley, Peter S
Published in The Journal of immunology (1950) (01.07.2017)
Published in The Journal of immunology (1950) (01.07.2017)
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survey of human brain transcriptome diversity at the single cell level
Darmanis, Spyros, Sloan, Steven A., Zhang, Ye, Enge, Martin, Caneda, Christine, Shuer, Lawrence M., Gephart, Melanie G. Hayden, Barres, Ben A., Quake, Stephen R.
Published in Proceedings of the National Academy of Sciences - PNAS (09.06.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (09.06.2015)
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Machine learning based analysis of single-cell data reveals evidence of subject-specific single-cell gene expression profiles in acute myeloid leukaemia patients and healthy controls
Chrysostomou, Andreas, Furlan, Cristina, Saccenti, Edoardo
Published in Biochimica et biophysica acta. Gene regulatory mechanisms (01.12.2024)
Published in Biochimica et biophysica acta. Gene regulatory mechanisms (01.12.2024)
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Correction: iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects
Liu, Yunqing, Zhao, Jiayi, Adams, Taylor S., Wang, Ningya, Schupp, Jonas C., Wu, Weimiao, McDonough, John E., Chupp, Geoffrey L., Kaminski, Naftali, Wang, Zuoheng, Yan, Xiting
Published in BMC bioinformatics (19.10.2023)
Published in BMC bioinformatics (19.10.2023)
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NEBULA is a fast negative binomial mixed model for differential or co-expression analysis of large-scale multi-subject single-cell data
He, Liang, Davila-Velderrain, Jose, Sumida, Tomokazu S., Hafler, David A., Kellis, Manolis, Kulminski, Alexander M.
Published in Communications Biology (26.05.2021)
Published in Communications Biology (26.05.2021)
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iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects
Liu, Yunqing, Zhao, Jiayi, Adams, Taylor S., Wang, Ningya, Schupp, Jonas C., Wu, Weimiao, McDonough, John E., Chupp, Geoffrey L., Kaminski, Naftali, Wang, Zuoheng, Yan, Xiting
Published in BMC bioinformatics (22.08.2023)
Published in BMC bioinformatics (22.08.2023)
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Cytosplore: Interactive Immune Cell Phenotyping for Large Single-Cell Datasets
Höllt, T., Pezzotti, N., van Unen, V., Koning, F., Eisemann, E., Lelieveldt, B., Vilanova, A.
Published in Computer graphics forum (01.06.2016)
Published in Computer graphics forum (01.06.2016)
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Single-cell RNA sequencing atlas of peripheral blood mononuclear cells from subjects with coronary artery disease
Song, Xiaolong, Fu, Yahong, Li, Chengcheng, Jia, Qiaowei, Ren, Mengmeng, Zhang, Xin, Bie, Hengjie, Zhou, Hanxiao, Gan, Xiongkang, He, Shu, Wang, Yanjun, Zhang, Sheng, Pan, Renyou, Sun, Weixin, Zhou, Haitang, Ni, Qimeng, Song, Jun, Zhang, Qian, Chen, Xiumei, Jia, Enzhi
Published in Biochimica et biophysica acta. Molecular cell research (01.01.2024)
Published in Biochimica et biophysica acta. Molecular cell research (01.01.2024)
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Single-cell Mayo Map (scMayoMap): an easy-to-use tool for cell type annotation in single-cell RNA-sequencing data analysis
Yang, Lu, Ng, Yan Er, Sun, Haipeng, Li, Ying, Chini, Lucas C. S., LeBrasseur, Nathan K., Chen, Jun, Zhang, Xu
Published in BMC biology (20.10.2023)
Published in BMC biology (20.10.2023)
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Cerebrospinal Fluid and Peripheral Blood Lymphomonocyte Single-Cell Transcriptomics in a Subject with Multiple Sclerosis Acutely Infected with HIV
Pinnetti, Carmela, Rozera, Gabriella, Messina, Francesco, Spezia, Pietro Giorgio, Lazzari, Elisabetta, Fabeni, Lavinia, Chillemi, Giovanni, Pietrucci, Daniele, Haggiag, Shalom, Mastrorosa, Ilaria, Vergori, Alessandra, Girardi, Enrico, Antinori, Andrea, Maggi, Fabrizio, Abbate, Isabella
Published in International journal of molecular sciences (01.10.2024)
Published in International journal of molecular sciences (01.10.2024)
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Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis
Reyfman, Paul A., Walter, James M., Joshi, Nikita, Anekalla, Kishore R., McQuattie-Pimentel, Alexandra C., Chiu, Stephen, Fernandez, Ramiro, Akbarpour, Mahzad, Chen, Ching-I, Ren, Ziyou, Verma, Rohan, Abdala-Valencia, Hiam, Nam, Kiwon, Chi, Monica, Han, SeungHye, Gonzalez-Gonzalez, Francisco J., Soberanes, Saul, Watanabe, Satoshi, Williams, Kinola J. N., Flozak, Annette S., Nicholson, Trevor T., Morgan, Vince K., Winter, Deborah R., Hinchcliff, Monique, Hrusch, Cara L., Guzy, Robert D., Bonham, Catherine A., Sperling, Anne I., Bag, Remzi, Hamanaka, Robert B., Mutlu, Gökhan M., Yeldandi, Anjana V., Marshall, Stacy A., Shilatifard, Ali, Amaral, Luis A. N., Perlman, Harris, Sznajder, Jacob I., Argento, A. Christine, Gillespie, Colin T., Dematte, Jane, Jain, Manu, Singer, Benjamin D., Ridge, Karen M., Lam, Anna P., Bharat, Ankit, Bhorade, Sangeeta M., Gottardi, Cara J., Budinger, G. R. Scott, Misharin, Alexander V.
Published in American journal of respiratory and critical care medicine (15.06.2019)
Published in American journal of respiratory and critical care medicine (15.06.2019)
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Dynamic changes in human single‐cell transcriptional signatures during fatal sepsis
Qiu, Xinru, Li, Jiang, Bonenfant, Jeff, Jaroszewski, Lukasz, Mittal, Aarti, Klein, Walter, Godzik, Adam, Nair, Meera G.
Published in Journal of leukocyte biology (01.12.2021)
Published in Journal of leukocyte biology (01.12.2021)
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Systematic immune cell dysregulation and molecular subtypes revealed by single-cell RNA-seq of subjects with type 1 diabetes
Honardoost, Mohammad Amin, Adinatha, Andreas, Schmidt, Florian, Ranjan, Bobby, Ghaeidamini, Maryam, Arul Rayan, Nirmala, Gek Liang Lim, Michelle, Joanito, Ignasius, Xiao Xuan Lin, Quy, Rajagopalan, Deepa, Qi Mok, Shi, Hwang, You Yi, Larbi, Anis, Khor, Chiea Chuen, Foo, Roger, Boehm, Bernhard Otto, Prabhakar, Shyam
Published in Genome medicine (27.03.2024)
Published in Genome medicine (27.03.2024)
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