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Molecular alterations of human diabetic heart disease revealed using single nucleus RNA sequencing
Gollmer, J, Horstmann, H, Potter, L, Vosko, I, Tomin, T, Pfeil, K, Briner-Gruenberger, R, Von Lewinski, D, Sedej, S, Scherr, D, Wende, A R, Rainer, P, Zirlik, A, Wolf, D, Bugger, H
Published in European heart journal (09.11.2023)
Published in European heart journal (09.11.2023)
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Abstract 4142546: Single-Nucleus RNA Sequencing Reveals Region-Specific Cell Composition and Transcriptional Variations in Cardiac Sarcoidosis
Neyazi, Meraj, Kim, Yuri, Brown, Kemar, Barish, Syndi, Gorham, Joshua, Layton, Olivia, Viveiros, Anissa, DeLaughter, Daniel, Beyer, Martin, Strohmenger, Viktoria, Reichart, Daniel, Bowles, Dawn, Glass, Carolyn, Oudit, Gavin, Seidman, Jonathan, Seidman, Christine
Published in Circulation (New York, N.Y.) (12.11.2024)
Published in Circulation (New York, N.Y.) (12.11.2024)
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Dissociation protocols used for sarcoma tissues bias the transcriptome observed in single-cell and single-nucleus RNA sequencing
Truong, Danh D., Lamhamedi-Cherradi, Salah-Eddine, Porter, Robert W., Krishnan, Sandhya, Swaminathan, Jyothishmathi, Gibson, Amber, Lazar, Alexander J., Livingston, J. Andrew, Gopalakrishnan, Vidya, Gordon, Nancy, Daw, Najat C., Navin, Nicholas E., Gorlick, Richard, Ludwig, Joseph A.
Published in BMC cancer (31.05.2023)
Published in BMC cancer (31.05.2023)
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Single Nucleus RNA Sequencing Reveals Interaction Between Microglia and Endothelial Cells in Mixed Alzheimer’s Disease and Vascular Pathology
Olayinka, Oluwatosin A, O'Neill, Nicholas K, Empawi, Jenny A, Bock, Payton, Hu, Junming, Wong, Melissa, Stein, Thor D., Wolozin, Benjamin, Zhang, Xiaoling, Farrer, Lindsay A.
Published in Alzheimer's & dementia (01.12.2024)
Published in Alzheimer's & dementia (01.12.2024)
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APOE genotype determines cell-type-specific pathological landscape of Alzheimer’s disease
Li, Zonghua, Martens, Yuka A., Ren, Yingxue, Jin, Yunjung, Sekiya, Hiroaki, Doss, Sydney V., Kouri, Naomi, Castanedes-Casey, Monica, Christensen, Trace A., Miller Nevalainen, Lindsay B., Takegami, Nanaka, Chen, Kai, Liu, Chia-Chen, Soto-Beasley, Alexandra, Boon, Baayla D.C., Labuzan, Sydney A., Ikezu, Tadafumi C., Chen, Yixing, Bartkowiak, Alexander D., Xhafkollari, Gisela, Wetmore, Allison M., Bennett, David A., Reichard, Ross R., Petersen, Ronald C., Kanekiyo, Takahisa, Ross, Owen A., Murray, Melissa E., Dickson, Dennis W., Bu, Guojun, Zhao, Na
Published in Neuron (Cambridge, Mass.) (07.05.2025)
Published in Neuron (Cambridge, Mass.) (07.05.2025)
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Reduced TREM2 activation in microglia of patients with Alzheimer's disease
Okuzono, Yuumi, Sakuma, Hiroyuki, Miyakawa, Shuuichi, Ifuku, Masataka, Lee, Jonghun, Das, Debashree, Banerjee, Antara, Zhao, Yang, Yamamoto, Koji, Ando, Tatsuya, Sato, Shuji
Published in FEBS open bio (01.11.2021)
Published in FEBS open bio (01.11.2021)
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Cell-specific expression biases in human cortex of genes associated with neurodevelopmental disorders
Russ, Jeffrey B., Stone, Alexa C., Maney, Kayli, Morris, Lauren C., Wright, Caroline F., Hurst, Jillian H., Cohen, Jennifer L.
Published in Scientific reports (02.07.2025)
Published in Scientific reports (02.07.2025)
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snRNA-seq reveals subcutaneous white adipose tissue remodeling upon return to thermoneutrality after cold stimulation
Yang, Yusha, Zhang, Guanyu, Yi, Ting, Yang, Shuran, Wu, Shuai, Zhang, Yongqiang, Zhang, Li, Li, Xi, Wu, Xiuxuan, Li, Jun, Yang, Danfeng
Published in Frontiers in cell and developmental biology (22.05.2025)
Published in Frontiers in cell and developmental biology (22.05.2025)
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Dissociation protocols used for sarcoma tissues bias the transcriptome observed in single-cell and single-nucleus RNA sequencing
Truong, Danh D, Salah-Eddine Lamhamedi-Cherradi, Porter, Robert W, Krishnan, Sandhya, Swaminathan, Jyothishmathi, Gibson, Amber, Lazar, Alexander J, Livingston, John A, Gopalakrishnan, Vidya, Gordon, Nancy, Daw, Najat C, Gorlick, Richard, Ludwig, Joseph A
Published in bioRxiv (12.04.2022)
Published in bioRxiv (12.04.2022)
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Associations of psychiatric disease and ageing with FKBP5 expression converge on superficial layer neurons of the neocortex
Matosin, Natalie, Arloth, Janine, Czamara, Darina, Edmond, Katrina Z., Maitra, Malosree, Fröhlich, Anna S., Martinelli, Silvia, Kaul, Dominic, Bartlett, Rachael, Curry, Amber R., Gassen, Nils C., Hafner, Kathrin, Müller, Nikola S., Worf, Karolina, Rehawi, Ghalia, Nagy, Corina, Halldorsdottir, Thorhildur, Cruceanu, Cristiana, Gagliardi, Miriam, Gerstner, Nathalie, Ködel, Maik, Murek, Vanessa, Ziller, Michael J., Scarr, Elizabeth, Tao, Ran, Jaffe, Andrew E., Arzberger, Thomas, Falkai, Peter, Kleinmann, Joel E., Weinberger, Daniel R., Mechawar, Naguib, Schmitt, Andrea, Dean, Brian, Turecki, Gustavo, Hyde, Thomas M., Binder, Elisabeth B.
Published in Acta neuropathologica (01.04.2023)
Published in Acta neuropathologica (01.04.2023)
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Single-Nucleus RNA-Seq Is Not Suitable for Detection of Microglial Activation Genes in Humans
Thrupp, Nicola, Sala Frigerio, Carlo, Wolfs, Leen, Skene, Nathan G., Fattorelli, Nicola, Poovathingal, Suresh, Fourne, Yannick, Matthews, Paul M., Theys, Tom, Mancuso, Renzo, de Strooper, Bart, Fiers, Mark
Published in Cell reports (Cambridge) (29.09.2020)
Published in Cell reports (Cambridge) (29.09.2020)
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Single-cell RNA sequencing data locate ALDH1A2-mediated retinoic acid synthetic pathway to glomerular parietal epithelial cells
Liu, Wen-Bin, Fermin, Damian, Xu, An-Long, Kopp, Jeffrey B., Xu, Qihe
Published in Experimental biology and medicine (Maywood, N.J.) (18.09.2024)
Published in Experimental biology and medicine (Maywood, N.J.) (18.09.2024)
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Single cell transcriptomes and multiscale networks from persons with and without Alzheimer’s disease
Wang, Qi, Antone, Jerry, Alsop, Eric, Reiman, Rebecca, Funk, Cory, Bendl, Jaroslav, Dudley, Joel T., Liang, Winnie S., Karr, Timothy L., Roussos, Panos, Bennett, David A., De Jager, Philip L., Serrano, Geidy E., Beach, Thomas G., Van Keuren-Jensen, Kendall, Mastroeni, Diego, Reiman, Eric M., Readhead, Benjamin P.
Published in Nature communications (10.07.2024)
Published in Nature communications (10.07.2024)
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Acquisition of epithelial plasticity in human chronic liver disease
Gribben, Christopher, Galanakis, Vasileios, Calderwood, Alexander, Williams, Eleanor C., Chazarra-Gil, Ruben, Larraz, Miguel, Frau, Carla, Puengel, Tobias, Guillot, Adrien, Rouhani, Foad J., Mahbubani, Krishnaa, Godfrey, Edmund, Davies, Susan E., Athanasiadis, Emmanouil, Saeb-Parsy, Kourosh, Tacke, Frank, Allison, Michael, Mohorianu, Irina, Vallier, Ludovic
Published in Nature (London) (06.06.2024)
Published in Nature (London) (06.06.2024)
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Systems biology dissection of PTSD and MDD across brain regions, cell types, and blood
Daskalakis, Nikolaos P., Iatrou, Artemis, Chatzinakos, Chris, Jajoo, Aarti, Snijders, Clara, Wylie, Dennis, DiPietro, Christopher P., Tsatsani, Ioulia, Chen, Chia-Yen, Pernia, Cameron D., Soliva-Estruch, Marina, Arasappan, Dhivya, Bharadwaj, Rahul A., Collado-Torres, Leonardo, Wuchty, Stefan, Alvarez, Victor E., Dammer, Eric B., Deep-Soboslay, Amy, Duong, Duc M., Eagles, Nick, Huber, Bertrand R., Huuki, Louise, Holstein, Vincent L., Logue, Mark W., Lugenbühl, Justina F., Maihofer, Adam X., Miller, Mark W., Nievergelt, Caroline M., Pertea, Geo, Ross, Deanna, Sendi, Mohammad S. E., Sun, Benjamin B., Tao, Ran, Tooke, James, Wolf, Erika J., Zeier, Zane, Berretta, Sabina, Champagne, Frances A., Hyde, Thomas, Seyfried, Nicholas T., Shin, Joo Heon, Weinberger, Daniel R., Nemeroff, Charles B., Kleinman, Joel E., Ressler, Kerry J., Nievergelt, Caroline M., Maihofer, Adam X., Atkinson, Elizabeth G., Chen, Chia-Yen, Choi, Karmel W., Coleman, Jonathan R. I., Daskalakis, Nikolaos P., Duncan, Laramie E., Polimanti, Renato, Aaronson, Cindy, Amstadter, Ananda B., Andersen, Soren B., Andreassen, Ole A., Arbisi, Paul A., Ashley-Koch, Allison E., Austin, S. Bryn, Avdibegoviç, Esmina, Babić, Dragan, Bacanu, Silviu-Alin, Baker, Dewleen G., Batzler, Anthony, Beckham, Jean C., Belangero, Sintia, Benjet, Corina, Bergner, Carisa, Bierer, Linda M., Biernacka, Joanna M., Bierut, Laura J., Bisson, Jonathan I., Boks, Marco P., Bolger, Elizabeth A., Brandolino, Amber, Breen, Gerome, Bressan, Rodrigo Affonseca, Bryant, Richard A., Bustamante, Angela C., Bybjerg-Grauholm, Jonas, Bækvad-Hansen, Marie, Børglum, Anders D., Børte, Sigrid, Cahn, Leah, Calabrese, Joseph R., Caldas-de-Almeida, Jose Miguel, Chatzinakos, Chris, Cheema, Sheraz, Clouston, Sean A. P., Colodro-Conde, Lucía, Coombes, Brandon J., Cruz-Fuentes, Carlos S., Dale, Anders M., Dalvie, Shareefa, Davis, Lea K., Deckert, Jürgen, Delahanty, Douglas L., Dennis, Michelle F.
Published in Science (American Association for the Advancement of Science) (24.05.2024)
Published in Science (American Association for the Advancement of Science) (24.05.2024)
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sNucConv: A bulk RNA-seq deconvolution method trained on single-nucleus RNA-seq data to estimate cell-type composition of human adipose tissues
Sorek, Gil, Haim, Yulia, Chalifa-Caspi, Vered, Lazarescu, Or, Ziv-Agam, Maya, Hagemann, Tobias, Nono Nankam, Pamela Arielle, Blüher, Matthias, Liberty, Idit F., Dukhno, Oleg, Kukeev, Ivan, Yeger-Lotem, Esti, Rudich, Assaf, Levin, Liron
Published in iScience (19.07.2024)
Published in iScience (19.07.2024)
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PDIA3 defines a novel subset of adipose macrophages to exacerbate the development of obesity and metabolic disorders
Luo, Jia-Hui, Wang, Fa-Xi, Zhao, Jia-Wei, Yang, Chun-Liang, Rong, Shan-Jie, Lu, Wan-Ying, Chen, Qi-Jie, Zhou, Qing, Xiao, Jun, Wang, Ya-Nan, Luo, Xi, Li, Yang, Song, Dan-Ni, Chen, Cai, Zhang, Cheng-Liang, Chen, Su-Hua, Yang, Ping, Xiong, Fei, Yu, Qi-Lin, Zhang, Shu, Liu, Shi-Wei, Sun, Fei, Wang, Cong-Yi
Published in Cell metabolism (01.10.2024)
Published in Cell metabolism (01.10.2024)
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