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A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach
d’Humières, Camille, Touchon, Marie, Dion, Sara, Cury, Jean, Ghozlane, Amine, Garcia-Garcera, Marc, Bouchier, Christiane, Ma, Laurence, Denamur, Erick, P.C.Rocha, Eduardo
Published in Scientific reports (05.08.2019)
Published in Scientific reports (05.08.2019)
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Exploratory metagenomic analyses of periweaning failure-to-thrive syndrome-affected pigs
Franzo, Giovanni, Kekarainen, Tuija, Llorens, Anna, Correa-Fiz, Florencia, Segalés, Joaquim
Published in Veterinary record (01.01.2019)
Published in Veterinary record (01.01.2019)
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Low-Bias RNA Sequencing of the HIV-2 Genome from Blood Plasma
James, Katherine L., de Silva, Thushan I., Brown, Katherine, Whittle, Hilton, Taylor, Stephen, McVean, Gilean, Esbjörnsson, Joakim, Rowland-Jones, Sarah L.
Published in Journal of virology (01.01.2019)
Published in Journal of virology (01.01.2019)
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Impact of diet change on the gut microbiome of common marmosets ( Callithrix jacchus )
Tang-Wing, Cassandra, Mohanty, Ipsita, Bryant, MacKenzie, Makowski, Katherine, Melendez, Daira, Dorrestein, Pieter C., Knight, Rob, Caraballo-Rodríguez, Andrés Mauricio, Allaband, Celeste, Jenné, Keith
Published in mSystems (20.08.2024)
Published in mSystems (20.08.2024)
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Phylogeography of Y-chromosome haplogroup Q1a1a-M120, a paternal lineage connecting populations in Siberia and East Asia
Sun, Na, Ma, Peng-Cheng, Yan, Shi, Wen, Shao-Qing, Sun, Chang, Du, Pan-Xin, Cheng, Hui-Zhen, Deng, Xiao-Hua, Wang, Chuan-Chao, Wei, Lan-Hai
Published in Annals of human biology (03.04.2019)
Published in Annals of human biology (03.04.2019)
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Multi-Omics Analyses Identify Signatures in Patients with Liver Cirrhosis and Hepatocellular Carcinoma
Lai, Ming-Wei, Chu, Yu-De, Hsu, Chao-Wei, Chen, Yi-Cheng, Liang, Kung-Hao, Yeh, Chau-Ting
Published in Cancers (29.12.2022)
Published in Cancers (29.12.2022)
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Host adaptation and microbial competition drive Ralstonia solanacearum phylotype I evolution in the Republic of Korea
Prokchorchik, Maxim, Pandey, Ankita, Moon, Hayoung, Kim, Wanhui, Jeon, Hyelim, Jung, Gayoung, Jayaraman, Jay, Poole, Stephen, Segonzac, Cécile, Sohn, Kee Hoon, McCann, Honour C.
Published in Microbial genomics (01.11.2020)
Published in Microbial genomics (01.11.2020)
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Long-Term Evolution of Burkholderia multivorans during a Chronic Cystic Fibrosis Infection Reveals Shifting Forces of Selection
Silva, Inês N., Santos, Pedro M., Santos, Mário R., Zlosnik, James E. A., Speert, David P., Buskirk, Sean W., Bruger, Eric L., Waters, Christopher M., Cooper, Vaughn S., Moreira, Leonilde M.
Published in mSystems (01.05.2016)
Published in mSystems (01.05.2016)
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Genomic data resources of the Brain Somatic Mosaicism Network for neuropsychiatric diseases
Garrison, McKinzie A., Jang, Yeongjun, Bae, Taejeong, Cherskov, Adriana, Emery, Sarah B., Fasching, Liana, Jones, Attila, Moldovan, John B., Molitor, Cindy, Pochareddy, Sirisha, Peters, Mette A., Shin, Joo Heon, Wang, Yifan, Yang, Xiaoxu, Akbarian, Schahram, Chess, Andrew, Gage, Fred H., Gleeson, Joseph G., Kidd, Jeffrey M., McConnell, Michael, Mills, Ryan E., Moran, John V., Park, Peter J., Sestan, Nenad, Urban, Alexander E., Vaccarino, Flora M., Walsh, Christopher A., Weinberger, Daniel R., Wheelan, Sarah J., Abyzov, Alexej
Published in Scientific data (20.11.2023)
Published in Scientific data (20.11.2023)
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High-Throughput Sequencing in Respiratory, Critical Care, and Sleep Medicine Research. An Official American Thoracic Society Workshop Report
Hersh, Craig P., Adcock, Ian M., Celedón, Juan C., Cho, Michael H., Christiani, David C., Himes, Blanca E., Kaminski, Naftali, Mathias, Rasika A., Meyers, Deborah A., Quackenbush, John, Redline, Susan, Steiling, Katrina A., Tabor, Holly K., Tobin, Martin D., Wurfel, Mark M., Yang, Ivana V., Koppelman, Gerard H.
Published in Annals of the American Thoracic Society (01.01.2019)
Published in Annals of the American Thoracic Society (01.01.2019)
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Cell-free DNA 5-hydroxymethylcytosine profiles of long non-coding RNA genes enable early detection and progression monitoring of human cancers
Zhou, Meng, Hou, Ping, Yan, Congcong, Chen, Lu, Li, Ke, Wang, Yiran, Zhao, Jingting, Su, Jianzhong, Sun, Jie
Published in Clinical epigenetics (01.12.2021)
Published in Clinical epigenetics (01.12.2021)
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Metagenomic Analysis of Fish-Associated Ca. Parilichlamydiaceae Reveals Striking Metabolic Similarities to the Terrestrial Chlamydiaceae
Taylor-Brown, Alyce, Pillonel, Trestan, Greub, Gilbert, Vaughan, Lloyd, Nowak, Barbara, Polkinghorne, Adam
Published in Genome biology and evolution (01.10.2018)
Published in Genome biology and evolution (01.10.2018)
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Systems medicine of inflammaging
Castellani, Gastone C., Menichetti, Giulia, Garagnani, Paolo, Giulia Bacalini, Maria, Pirazzini, Chiara, Franceschi, Claudio, Collino, Sebastiano, Sala, Claudia, Remondini, Daniel, Giampieri, Enrico, Mosca, Ettore, Bersanelli, Matteo, Vitali, Silvia, Valle, Italo Faria do, Liò, Pietro, Milanesi, Luciano
Published in Briefings in bioinformatics (01.05.2016)
Published in Briefings in bioinformatics (01.05.2016)
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MALVA: Genotyping by Mapping-free ALlele Detection of Known VAriants
Denti, Luca, Previtali, Marco, Bernardini, Giulia, Schönhuth, Alexander, Bonizzoni, Paola
Published in iScience (30.08.2019)
Published in iScience (30.08.2019)
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Paternal heritage of the Han Chinese in Henan province (Central China): high diversity and evidence of in situ Neolithic expansions
Lu, Qi, Cheng, Hui-Zhen, Li, Li, Yao, Hong-Bin, Ru, Kai, Wen, Shao-Qing, Shi, Mei-Sen, Zeng, Zhao-Shu, Wei, Lan-Hai
Published in Annals of human biology (02.04.2020)
Published in Annals of human biology (02.04.2020)
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Development of a Targeted Multi-Disorder High-Throughput Sequencing Assay for the Effective Identification of Disease-Causing Variants
Delio, Maria, Patel, Kunjan, Maslov, Alex, Marion, Robert W., McDonald, Thomas V., Cadoff, Evan M., Golden, Aaron, Greally, John M., Vijg, Jan, Morrow, Bernice, Montagna, Cristina
Published in PloS one (27.07.2015)
Published in PloS one (27.07.2015)
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Evolution of tissue and developmental specificity of transcription start sites in Bos taurus indicus
Forutan, Mehrnush, Ross, Elizabeth, Chamberlain, Amanda J., Nguyen, Loan, Mason, Brett, Moore, Stephen, Garner, Josie B., Xiang, Ruidong, Hayes, Ben J.
Published in Communications biology (01.07.2021)
Published in Communications biology (01.07.2021)
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