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Metatranscriptomics of Nasopharyngeal Microbiota and Host Distinguish between Pneumonia and Health
Nannapaneni, Priyanka, Sundh, John, Prast-Nielsen, Stefanie, Rhedin, Samuel, Örtqvist, Åke, Naucler, Pontus, Henriques-Normark, Birgitta
Published in American journal of respiratory and critical care medicine (15.12.2022)
Published in American journal of respiratory and critical care medicine (15.12.2022)
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Fecal metatranscriptomics and glycomics suggest that bovine milk oligosaccharides are fully utilized by healthy adults
Westreich, Samuel T., Salcedo, Jaime, Durbin-Johnson, Blythe, Smilowitz, Jennifer T., Korf, Ian, Mills, David A., Barile, Daniela, Lemay, Danielle G.
Published in The Journal of nutritional biochemistry (01.05.2020)
Published in The Journal of nutritional biochemistry (01.05.2020)
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Metatranscriptomics to characterize respiratory virome, microbiome, and host response directly from clinical samples
Rajagopala, Seesandra V., Bakhoum, Nicole G., Pakala, Suman B., Shilts, Meghan H., Rosas-Salazar, Christian, Mai, Annie, Boone, Helen H., McHenry, Rendie, Yooseph, Shibu, Halasa, Natasha, Das, Suman R.
Published in Cell reports methods (25.10.2021)
Published in Cell reports methods (25.10.2021)
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Duodenal Metatranscriptomics to Define Human and Microbial Functional Alterations Associated with Severe Obesity: A Pilot Study
Granata, Ilaria, Nardelli, Carmela, D’Argenio, Valeria, Tramontano, Salvatore, Compare, Debora, Guarracino, Mario Rosario, Nardone, Gerardo, Pilone, Vincenzo, Sacchetti, Lucia
Published in Microorganisms (Basel) (17.11.2020)
Published in Microorganisms (Basel) (17.11.2020)
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Multi-omics profiles of the intestinal microbiome in irritable bowel syndrome and its bowel habit subtypes
Jacobs, Jonathan P., Lagishetty, Venu, Hauer, Megan C., Labus, Jennifer S., Dong, Tien S., Toma, Ryan, Vuyisich, Momchilo, Naliboff, Bruce D., Lackner, Jeffrey M., Gupta, Arpana, Tillisch, Kirsten, Mayer, Emeran A.
Published in Microbiome (10.01.2023)
Published in Microbiome (10.01.2023)
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Lower Airway Dysbiosis Augments Lung Inflammatory Injury in Mild-to-Moderate Chronic Obstructive Pulmonary Disease
Sulaiman, Imran, Wu, Benjamin G., Chung, Matthew, Isaacs, Bradley, Tsay, Jun-Chieh J., Holub, Meredith, Barnett, Clea R., Kwok, Benjamin, Kugler, Matthias C., Natalini, Jake G., Singh, Shivani, Li, Yonghua, Schluger, Rosemary, Carpenito, Joseph, Collazo, Destiny, Perez, Luisanny, Kyeremateng, Yaa, Chang, Miao, Campbell, Christina D., Hansbro, Philip M., Oppenheimer, Beno W., Berger, Kenneth I., Goldring, Roberta M., Koralov, Sergei B., Weiden, Michael D., Xiao, Rui, D’Armiento, Jeanine, Clemente, Jose C., Ghedin, Elodie, Segal, Leopoldo N.
Published in American journal of respiratory and critical care medicine (15.11.2023)
Published in American journal of respiratory and critical care medicine (15.11.2023)
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Complementary Roles of Wood-Inhabiting Fungi and Bacteria Facilitate Deadwood Decomposition
TlÁskal, Vojtěch, BrabcovÁ, Vendula, Větrovský, TomÁš, Jomura, Mayuko, López-Mondéjar, Rubén, Oliveira Monteiro, Lummy Maria, Saraiva, João Pedro, Human, Zander Rainier, Cajthaml, TomÁš, Nunes da Rocha, Ulisses, Baldrian, Petr
Published in mSystems (12.01.2021)
Published in mSystems (12.01.2021)
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Multi-omics gut microbiome signatures in obese women: role of diet and uncontrolled eating behavior
Barone, Monica, Garelli, Silvia, Rampelli, Simone, Agostini, Alessandro, Matysik, Silke, D’Amico, Federica, Krautbauer, Sabrina, Mazza, Roberta, Salituro, Nicola, Fanelli, Flaminia, Iozzo, Patricia, Sanz, Yolanda, Candela, Marco, Brigidi, Patrizia, Pagotto, Uberto, Turroni, Silvia
Published in BMC medicine (27.12.2022)
Published in BMC medicine (27.12.2022)
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Linking Transcriptional Dynamics of Peat Microbiomes to Methane Fluxes during a Summer Drought in Two Rewetted Fens
Wang, Haitao, Jurasinski, Gerald, Täumer, Jana, Kuß, Andreas W., Groß, Verena, Köhn, Daniel, Günther, Anke, Urich, Tim
Published in Environmental science & technology (28.03.2023)
Published in Environmental science & technology (28.03.2023)
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Divergent Genomic Adaptations in the Microbiomes of Arctic Subzero Sea-Ice and Cryopeg Brines
Rapp, Josephine Z., Sullivan, Matthew B., Deming, Jody W.
Published in Frontiers in microbiology (22.07.2021)
Published in Frontiers in microbiology (22.07.2021)
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Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
Mason, Olivia U, Hazen, Terry C, Borglin, Sharon, Chain, Patrick S G, Dubinsky, Eric A, Fortney, Julian L, Han, James, Holman, Hoi-Ying N, Hultman, Jenni, Lamendella, Regina, Mackelprang, Rachel, Malfatti, Stephanie, Tom, Lauren M, Tringe, Susannah G, Woyke, Tanja, Zhou, Jizhong, Rubin, Edward M, Jansson, Janet K
Published in The ISME Journal (01.09.2012)
Published in The ISME Journal (01.09.2012)
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Synergistic functional activity of a landfill microbial consortium in a microplastic-enriched environment
Satta, Alessandro, Ghiotto, Gabriele, Santinello, Davide, Giangeri, Ginevra, Bergantino, Elisabetta, Modesti, Michele, Raga, Roberto, Treu, Laura, Campanaro, Stefano, Zampieri, Guido
Published in The Science of the total environment (15.10.2024)
Published in The Science of the total environment (15.10.2024)
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Comparison of Niskin vs. in situ approaches for analysis of gene expression in deep Mediterranean Sea water samples
Edgcomb, V.P., Taylor, C., Pachiadaki, M.G., Honjo, S., Engstrom, I., Yakimov, M.
Published in Deep-sea research. Part II, Topical studies in oceanography (01.07.2016)
Published in Deep-sea research. Part II, Topical studies in oceanography (01.07.2016)
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Targeted curation of the gut microbial gene content modulating human cardiovascular disease
Borton, Mikayla A., Shaffer, Michael, Hoyt, David W., Jiang, Ruisheng, Ellenbogen, Jared B., Purvine, Samuel, Nicora, Carrie D., Eder, Elizabeth K., Wong, Allison R., Smulian, A. George, Lipton, Mary S., Krzycki, Joseph A., Wrighton, Kelly C.
Published in mBio (31.10.2023)
Published in mBio (31.10.2023)
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Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean
Shi, Yanmei, Tyson, Gene W, Eppley, John M, DeLong, Edward F
Published in The ISME Journal (01.06.2011)
Published in The ISME Journal (01.06.2011)
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Instability of the faecal microbiota in diarrhoea-predominant irritable bowel syndrome
Durbán, Ana, Abellán, Juan J., Jiménez-Hernández, Nuria, Artacho, Alejandro, Garrigues, Vicente, Ortiz, Vicente, Ponce, Julio, Latorre, Amparo, Moya, Andrés
Published in FEMS microbiology ecology (01.12.2013)
Published in FEMS microbiology ecology (01.12.2013)
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Functional plasticity in oyster gut microbiomes along a eutrophication gradient in an urbanized estuary
Stevick, Rebecca J., Post, Anton F., Gómez-Chiarri, Marta
Published in Animal microbiome (06.01.2021)
Published in Animal microbiome (06.01.2021)
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Compositional and Functional Differences in the Human Gut Microbiome Correlate with Clinical Outcome following Infection with Wild-Type Salmonella enterica Serovar Typhi
Zhang, Yan, Brady, Arthur, Jones, Cheron, Song, Yang, Darton, Thomas C., Jones, Claire, Blohmke, Christoph J., Pollard, Andrew J., Magder, Laurence S., Fasano, Alessio, Sztein, Marcelo B., Fraser, Claire M.
Published in mBio (08.05.2018)
Published in mBio (08.05.2018)
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In vitro Study of Lactobacillus paracasei CNCM I-1518 in Healthy and Clostridioides difficile Colonized Elderly Gut Microbiota
Fehlbaum, Sophie, Chassard, Christophe, Schwab, Clarissa, Voolaid, Maarja, Fourmestraux, Candice, Derrien, Muriel, Lacroix, Christophe
Published in Frontiers in nutrition (Lausanne) (10.12.2019)
Published in Frontiers in nutrition (Lausanne) (10.12.2019)
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