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Published in Science signaling (04.11.2014)
Published in Science signaling (04.11.2014)
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pyKVFinder: an efficient and integrable Python package for biomolecular cavity detection and characterization in data science
Guerra, João Victor da Silva, Ribeiro-Filho, Helder Veras, Jara, Gabriel Ernesto, Bortot, Leandro Oliveira, Pereira, José Geraldo de Carvalho, Lopes-de-Oliveira, Paulo Sérgio
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Published in BMC bioinformatics (20.12.2021)
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Molecular Mechanisms Associated with Xylan Degradation by Xanthomonas Plant Pathogens
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Published in The Journal of biological chemistry (14.11.2014)
Published in The Journal of biological chemistry (14.11.2014)
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Published in European journal of pharmacology (05.07.2018)
Published in European journal of pharmacology (05.07.2018)
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Hydrocephalus and arthrogryposis in an immunocompetent mouse model of ZIKA teratogeny: A developmental study
Xavier-Neto, Jose, Carvalho, Murilo, Pascoalino, Bruno Dos Santos, Cardoso, Alisson Campos, Costa, Ângela Maria Sousa, Pereira, Ana Helena Macedo, Santos, Luana Nunes, Saito, Ângela, Marques, Rafael Elias, Smetana, Juliana Helena Costa, Consonni, Silvio Roberto, Bandeira, Carla, Costa, Vivian Vasconcelos, Bajgelman, Marcio Chaim, de Oliveira, Paulo Sérgio Lopes, Cordeiro, Marli Tenorio, Gonzales Gil, Laura Helena Vega, Pauletti, Bianca Alves, Granato, Daniela Campos, Paes Leme, Adriana Franco, Freitas-Junior, Lucio, Holanda de Freitas, Carolina Borsoi Moraes, Teixeira, Mauro Martins, Bevilacqua, Estela, Franchini, Kleber
Published in PLoS neglected tropical diseases (23.02.2017)
Published in PLoS neglected tropical diseases (23.02.2017)
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ParKVFinder: A thread-level parallel approach in biomolecular cavity detection
Guerra, João Victor da Silva, Ribeiro Filho, Helder Veras, Bortot, Leandro Oliveira, Honorato, Rodrigo Vargas, Pereira, José Geraldo de Carvalho, Lopes-de-Oliveira, Paulo Sérgio
Published in SoftwareX (01.07.2020)
Published in SoftwareX (01.07.2020)
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Screening for PPAR Non-Agonist Ligands Followed by Characterization of a Hit, AM-879, with Additional No-Adipogenic and cdk5-Mediated Phosphorylation Inhibition Properties
Ribeiro Filho, Helder Veras, Bernardi Videira, Natália, Bridi, Aline Villanova, Tittanegro, Thais Helena, Helena Batista, Fernanda Aparecida, de Carvalho Pereira, José Geraldo, de Oliveira, Paulo Sérgio Lopes, Bajgelman, Marcio Chaim, Le Maire, Albane, Figueira, Ana Carolina Migliorini
Published in Frontiers in endocrinology (Lausanne) (01.02.2018)
Published in Frontiers in endocrinology (Lausanne) (01.02.2018)
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Genes Controlled by DNA Methylation Are Involved in Wilms Tumor Progression
Guerra, João Victor da Silva, Pereira, Bruna Maria de Sá, Cruz, Jéssica Gonçalves Vieira da, Scherer, Nicole de Miranda, Furtado, Carolina, Montalvão de Azevedo, Rafaela, Oliveira, Paulo Sergio Lopes de, Faria, Paulo, Boroni, Mariana, de Camargo, Beatriz, Maschietto, Mariana
Published in Cells (Basel, Switzerland) (17.08.2019)
Published in Cells (Basel, Switzerland) (17.08.2019)
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Cryo-EM structure of the mature and infective Mayaro virus at 4.4 Å resolution reveals features of arthritogenic alphaviruses
Ribeiro-Filho, Helder V., Coimbra, Lais D., Cassago, Alexandre, Rocha, Rebeca P. F., Guerra, João Victor da Silva, de Felicio, Rafael, Carnieli, Carolina Moretto, Leme, Luiza, Padilha, Antonio Cláudio, Paes Leme, Adriana F., Trivella, Daniela B. B., Portugal, Rodrigo Villares, Lopes-de-Oliveira, Paulo Sérgio, Marques, Rafael Elias
Published in Nature communications (24.05.2021)
Published in Nature communications (24.05.2021)
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Discovery and structural characterization of chicoric acid as a SARS-CoV-2 nucleocapsid protein ligand and RNA binding disruptor
Mercaldi, Gustavo Fernando, Bezerra, Eduardo Henrique Salviano, Batista, Fernanda Aparecida Heleno, Tonoli, Celisa Caldana Costa, Soprano, Adriana Santos, Shimizu, Jacqueline Farinha, Nagai, Alice, da Silva, Jaqueline Cristina, Filho, Helder Veras Ribeiro, do Nascimento Faria, Jéssica, da Cunha, Marcos Guilherme, Zeri, Ana Carolina Mattos, Nascimento, Andrey Fabricio Ziem, Proenca-Modena, José Luiz, Bajgelman, Marcio Chaim, Rocco, Silvana Aparecida, Lopes-de-Oliveira, Paulo Sérgio, Cordeiro, Artur Torres, Bruder, Marjorie, Marques, Rafael Elias, Sforça, Mauricio Luis, Franchini, Kleber Gomes, Benedetti, Celso Eduardo, Figueira, Ana Carolina Migliorini, Trivella, Daniela Barretto Barbosa
Published in Scientific reports (02.11.2022)
Published in Scientific reports (02.11.2022)
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Crystal Structure and Regulation of the Citrus Pol III Repressor MAF1 by Auxin and Phosphorylation
Soprano, Adriana Santos, Giuseppe, Priscila Oliveira de, Shimo, Hugo Massayoshi, Lima, Tatiani Brenelli, Batista, Fernanda Aparecida Heleno, Righetto, Germanna Lima, Pereira, José Geraldo de Carvalho, Granato, Daniela Campos, Nascimento, Andrey Fabricio Ziem, Gozzo, Fabio Cesar, de Oliveira, Paulo Sérgio Lopes, Figueira, Ana Carolina Migliorini, Smetana, Juliana Helena Costa, Paes Leme, Adriana Franco, Murakami, Mario Tyago, Benedetti, Celso Eduardo
Published in Structure (London) (05.09.2017)
Published in Structure (London) (05.09.2017)
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Mechanistic insights revealed by a UBE2A mutation linked to intellectual disability
de Oliveira, Juliana Ferreira, do Prado, Paula Favoretti Vital, da Costa, Silvia Souza, Sforça, Mauricio Luis, Canateli, Camila, Ranzani, Americo Tavares, Maschietto, Mariana, de Oliveira, Paulo Sergio Lopes, Otto, Paulo A, Klevit, Rachel E, Krepischi, Ana Cristina Victorino, Rosenberg, Carla, Franchini, Kleber Gomes
Published in Nature chemical biology (01.01.2019)
Published in Nature chemical biology (01.01.2019)
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Negative regulation of bacterial killing and inflammation by two novel CD16 ligands
Beppler, Jaqueline, Mkaddem, Sanae Ben, Michaloski, Jussara, Honorato, Rodrigo Vargas, Velasco, Irineu Tadeu, Oliveira, Paulo Sérgio Lopes, Giordano, Ricardo José, Monteiro, Renato C., Pinheiro da Silva, Fabiano
Published in European journal of immunology (01.08.2016)
Published in European journal of immunology (01.08.2016)
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Gallic acid modulates phenotypic behavior and gene expression in oral squamous cell carcinoma cells by interfering with leptin pathway
Santos, Eliane Macedo Sobrinho, da Rocha, Rogério Gonçalves, Santos, Hércules Otacílio, Guimarães, Talita Antunes, de Carvalho Fraga, Carlos Alberto, da Silveira, Luiz Henrique, Batista, Paulo Ricardo, de Oliveira, Paulo Sérgio Lopes, Melo, Geraldo Aclécio, Santos, Sérgio Henrique, de Paula, Alfredo Maurício Batista, Guimarães, André Luiz Sena, Farias, Lucyana Conceição
Published in Pathology, research and practice (01.01.2018)
Published in Pathology, research and practice (01.01.2018)
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Structural analysis of intermolecular interactions in the kinesin adaptor complex fasciculation and elongation protein zeta 1/ short coiled-coil protein (FEZ1/SCOCO)
Alborghetti, Marcos Rodrigo, Furlan, Ariane da Silva, da Silva, Júlio César, Sforça, Maurício Luís, Honorato, Rodrigo Vargas, Granato, Daniela Campos, dos Santos Migueleti, Deivid Lucas, Neves, Jorge L, de Oliveira, Paulo Sergio Lopes, Paes-Leme, Adriana Franco, Zeri, Ana Carolina de Mattos, de Torriani, Iris Concepcion Linares, Kobarg, Jörg
Published in PloS one (07.10.2013)
Published in PloS one (07.10.2013)
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Improving obesity research: Unveiling metabolic pathways through a 3D In vitro model of adipocytes using 3T3-L1 cells
Avelino, Thayna Mendonca, Provencio, Marta García-Arévalo, Peroni, Luis Antonio, Domingues, Romênia Ramos, Torres, Felipe Rafael, de Oliveira, Paulo Sergio Lopes, Leme, Adriana Franco Paes, Figueira, Ana Carolina Migliorini
Published in PloS one (31.05.2024)
Published in PloS one (31.05.2024)
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Oligomerization as a strategy for cold adaptation: Structure and dynamics of the GH1 β-glucosidase from Exiguobacterium antarcticum B7
Zanphorlin, Leticia Maria, de Giuseppe, Priscila Oliveira, Honorato, Rodrigo Vargas, Tonoli, Celisa Caldana Costa, Fattori, Juliana, Crespim, Elaine, de Oliveira, Paulo Sergio Lopes, Ruller, Roberto, Murakami, Mario Tyago
Published in Scientific reports (31.03.2016)
Published in Scientific reports (31.03.2016)
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Structural dynamics of SARS-CoV-2 nucleocapsid protein induced by RNA binding
Ribeiro-Filho, Helder Veras, Jara, Gabriel Ernesto, Batista, Fernanda Aparecida Heleno, Schleder, Gabriel Ravanhani, Costa Tonoli, Celisa Caldana, Soprano, Adriana Santos, Guimarães, Samuel Leite, Borges, Antonio Carlos, Cassago, Alexandre, Bajgelman, Marcio Chaim, Marques, Rafael Elias, Trivella, Daniela Barretto Barbosa, Franchini, Kleber Gomes, Figueira, Ana Carolina Migliorini, Benedetti, Celso Eduardo, Lopes-de-Oliveira, Paulo Sergio
Published in PLoS computational biology (12.05.2022)
Published in PLoS computational biology (12.05.2022)
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DNA methylation of the promoter region at the CREB1 binding site is a mechanism for the epigenetic regulation of brain-specific PKMζ
Pramio, Dimitrius Tansini, Vieceli, Felipe Monteleone, Varella-Branco, Elisa, Goes, Carolina Purcell, Kobayashi, Gerson Shigeru, da Silva Pelegrina, Diogo Vieira, de Moraes, Beatriz Caroline, El Allam, Aicha, De Kumar, Bony, Jara, Gabriel, Farfel, José Marcelo, Bennett, David Alan, Kundu, Somanath, Viapiano, Mariano S., Reis, Eduardo Moraes, de Oliveira, Paulo Sergio Lopes, dos Santos e Passos-Bueno, Maria Rita, Rothlin, Carla V., Ghosh, Sourav, Schechtman, Deborah
Published in Biochimica et biophysica acta. Gene regulatory mechanisms (01.03.2023)
Published in Biochimica et biophysica acta. Gene regulatory mechanisms (01.03.2023)
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