Host DNA depletion can increase the sensitivity of Mycobacterium spp. detection through shotgun metagenomics in sputum
Kok, Nienke A., Peker, Nilay, Schuele, Leonard, de Beer, Jessica L., Rossen, John W. A., Sinha, Bhanu, Couto, Natacha
Published in Frontiers in microbiology (25.10.2022)
Published in Frontiers in microbiology (25.10.2022)
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Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data
Bryant, Josephine M, Schürch, Anita C, van Deutekom, Henk, Harris, Simon R, de Beer, Jessica L, de Jager, Victor, Kremer, Kristin, van Hijum, Sacha A F T, Siezen, Roland J, Borgdorff, Martien, Bentley, Stephen D, Parkhill, Julian, van Soolingen, Dick
Published in BMC infectious diseases (27.02.2013)
Published in BMC infectious diseases (27.02.2013)
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Comparative Study of IS6110 Restriction Fragment Length Polymorphism and Variable-Number Tandem-Repeat Typing of Mycobacterium tuberculosis Isolates in the Netherlands, Based on a 5-Year Nationwide Survey
de Beer, Jessica L, van Ingen, Jakko, de Vries, Gerard, Erkens, Connie, Sebek, Maruschka, Mulder, Arnout, Sloot, Rosa, van den Brandt, Anne-Marie, Enaimi, Mimount, Kremer, Kristin, Supply, Philip, van Soolingen, Dick
Published in Journal of Clinical Microbiology (01.04.2013)
Published in Journal of Clinical Microbiology (01.04.2013)
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Journal Article
Pyrazinamide resistance-conferring mutations in pncA and the transmission of multidrug resistant TB in Georgia
Sengstake, Sarah, Bergval, Indra L, Schuitema, Anja R, de Beer, Jessica L, Phelan, Jody, de Zwaan, Rina, Clark, Taane G, van Soolingen, Dick, Anthony, Richard M
Published in BMC infectious diseases (12.07.2017)
Published in BMC infectious diseases (12.07.2017)
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Journal Article
Clustering of Tuberculosis Cases Based on Variable-Number Tandem-Repeat Typing in Relation to the Population Structure of Mycobacterium tuberculosis in the Netherlands
Sloot, Rosa, Borgdorff, Martien W, de Beer, Jessica L, van Ingen, Jakko, Supply, Philip, van Soolingen, Dick
Published in Journal of Clinical Microbiology (01.07.2013)
Published in Journal of Clinical Microbiology (01.07.2013)
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M. tuberculosis genotypic diversity and drug susceptibility pattern in HIV-infected and non-HIV-infected patients in northern Tanzania
Kibiki, Gibson S, Mulder, Bert, Dolmans, Wil M V, de Beer, Jessica L, Boeree, Martin, Sam, Noel, van Soolingen, Dick, Sola, Christophe, van der Zanden, Adri G M
Published in BMC microbiology (31.05.2007)
Published in BMC microbiology (31.05.2007)
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Comparison of 14 Molecular Assays for Detection of Mycobacterium tuberculosis Complex in Bronchoalveolar Lavage Fluid
Akkerman, Onno W, van der Werf, Tjip S, de Boer, Maria, de Beer, Jessica L, Rahim, Zeaur, Rossen, John W A, van Soolingen, Dick, Kerstjens, Huib A M, van der Zanden, Adri G M
Published in Journal of Clinical Microbiology (01.11.2013)
Published in Journal of Clinical Microbiology (01.11.2013)
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Journal Article
Genetic profiling of Mycobacterium tuberculosis revealed "modern" Beijing strains linked to MDR-TB from Southwestern Colombia
Nieto Ramirez, Luisa Maria, Ferro, Beatriz E, Diaz, Gustavo, Anthony, Richard M, de Beer, Jessica, van Soolingen, Dick
Published in PloS one (24.04.2020)
Published in PloS one (24.04.2020)
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Optimization of standard in-house 24-locus variable-number tandem-repeat typing for Mycobacterium tuberculosis and its direct application to clinical material
de Beer, Jessica L, Akkerman, Onno W, Schürch, Anita C, Mulder, Arnout, van der Werf, Tjip S, van der Zanden, Adri G M, van Ingen, Jakko, van Soolingen, Dick
Published in Journal of clinical microbiology (01.05.2014)
Published in Journal of clinical microbiology (01.05.2014)
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Journal Article
Inferring patient to patient transmission of Mycobacterium tuberculosisfrom whole genome sequencing data
Bryant, Josephine M, Schürch, Anita C, van Deutekom, Henk, Harris, Simon R, de Beer, Jessica L, de Jager, Victor, Kremer, Kristin, van Hijum, Sacha A F T, Siezen, Roland J, Borgdorff, Martien, Bentley, Stephen D, Parkhill, Julian, van Soolingen, Dick
Published in BMC infectious diseases (27.02.2013)
Published in BMC infectious diseases (27.02.2013)
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Journal Article
Elevated risk of infection with SARS-CoV-2 Beta, Gamma, and Delta variants compared with Alpha variant in vaccinated individuals
Andeweg, Stijn P, Vennema, Harry, Veldhuijzen, Irene, Smorenburg, Naomi, Schmitz, Dennis, Zwagemaker, Florian, van Gageldonk-Lafeber, Arianne B, Hahné, Susan J M, Reusken, Chantal, Knol, Mirjam J, Eggink, Dirk
Published in Science translational medicine (22.02.2023)
Published in Science translational medicine (22.02.2023)
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Mechanisms of Phenotypic Rifampicin Tolerance in Mycobacterium tuberculosis Beijing Genotype Strain B0/W148 Revealed by Proteomics
de Keijzer, Jeroen, Mulder, Arnout, de Beer, Jessica, de Ru, Arnoud H, van Veelen, Peter A, van Soolingen, Dick
Published in Journal of proteome research (01.04.2016)
Published in Journal of proteome research (01.04.2016)
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Epidemiological and clinical insights into the enterovirus D68 upsurge in Europe 2021/22 and the emergence of novel B3-derived lineages, ENPEN multicentre study
Simoes, Margarida Pires, Hodcroft, Emma, Simmonds, Peter, Albert, Jan, Alidjinou, Enagon, Ambert-Balay, Katia, Andrés, Cristina, Antón, Andrés, Auvray, Christelle, Bailly, Jean-Luc, Baldanti, Fausto, Bastings, Capser, Beard, Stuart, Pereira, Carla Berengua, Berginc, Natasa, Bloemen, Mandy, Blomqvist, Soile, Bosma, Froukje, Böttcher, Sindy, Bubba, Laura, Buderus, Stafan, Cabrerizo, Maria, Calvo, Christina, Celma, Christina, Ceriotti, Ferruccio, Clark, Gemma, Costa, Inës, Coste-Burel, Marianne, Couderé, Karen, Cremer, Jeroen, del Cuerpo Casas, Margarita, Daehne, Theo, de Beer, Jessica, de Ceano-Vivas, Maria, de Gascun, Cillian, de Rougemont, Alexis, Dean, Johnathan, Dembinski, Jennifer, Diedrich, Sabine, Diez-Domingo, Javier, Dillner, Lena, Dorenberg, Dagny, Ducancelle, Alexandra, Dudman, Susanne, Dyrdak, Robert, Eis-Huebinger, Anna-Maria, Falces-Romero, Iker, Farkas, Agnes, Feeney, Susan, Fernandez-Garcia, Maria, Flipse, Jacky, Franck, Kristina, Galli, Cristina, Garrigue, Isabelle, Geeraedts, Felix, Georgieva, Irina, Giardina, Federica, Guiomar, Raquel, Hauzenberger, Elenor, Heikens, Esther, Henquell, Cécille, Hober, Didier, Hönemann, Amrio, Howson-Wells, Hannah, Hruškar, Željka, Ikonen, Niina, Imbert, Berthemarie, Jansz, Arjan, Jeannoël, Marion, Jiřincová, Helena, Josset, Laurence, Keeren, Kathrin, Kramer-Lindhout, Naomie, Krokstad, Sidsel, Lazrek, Mouna, Le Guillou-Guillemette, Hélène, Lefeuvre, Caroline, Lind, Andreas, Lunar, Maja, Maier, Melanie, Marque-Juillet, Stéphanie, Mcclure, C Patrick, Mckenna, James, Meijer, Adam, Menasalvas Ruiz, Ana, Mengual-Chuliá, Beatriz, Midgley, Sofie, Mirand, Audrey, Molenkamp, Richard, Montes, Milagrosa, Moreno-Docón, Antonio, Morley, Ursula, Murk, Jean-Luc, Navascués-Ortega, Ana, Nijhuis, Roel, Nikolaeva-Glomb, Lubomira, Nordbø, Svein, Numanovic, Sanela, Oggioni, Massimo, Oñate Vergara, Eider
Published in The Journal of infectious diseases (2024)
Published in The Journal of infectious diseases (2024)
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High quality of SARS-CoV-2 molecular diagnostics in a diverse laboratory landscape through supported benchmark testing and External Quality Assessment
Sluimer, John, van den Akker, Willem M. R., Goderski, Gabriel, Swart, Arno, van der Veer, Bas, Cremer, Jeroen, Chung, Ngoc Hoa, Molenkamp, Richard, Voermans, Jolanda, Guldemeester, Judith, Eggink, Dirk, Presser, Lance D., Meijer, Adam
Published in Scientific reports (16.01.2024)
Published in Scientific reports (16.01.2024)
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Quick and cheap MIRU-VNTR typing of Mycobacterium tuberculosis species complex using duplex PCR
Yasmin, Memona, Le Moullec, Stéphanie, Siddiqui, Rubina Tabassum, De Beer, Jessica, Sola, Christophe, Refrégier, Guislaine
Published in Tuberculosis (Edinburgh, Scotland) (01.12.2016)
Published in Tuberculosis (Edinburgh, Scotland) (01.12.2016)
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Evaluation of whole-genome sequence data analysis approaches for short- and long-read sequencing of Mycobacterium tuberculosis
Peker, Nilay, Schuele, Leonard, Kok, Nienke, Terrazos, Miguel, Neuenschwander, Stefan M, de Beer, Jessica, Akkerman, Onno, Peter, Silke, Ramette, Alban, Merker, Matthias, Niemann, Stefan, Couto, Natacha, Sinha, Bhanu, Rossen, John Wa
Published in Microbial genomics (01.11.2021)
Published in Microbial genomics (01.11.2021)
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