NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy
de Koning, Willem, Miladi, Milad, Hiltemann, Saskia, Heikema, Astrid, Hays, John P, Flemming, Stephan, van den Beek, Marius, Mustafa, Dana A, Backofen, Rolf, Grüning, Björn, Stubbs, Andrew P
Published in Gigascience (17.10.2020)
Published in Gigascience (17.10.2020)
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Journal Article
RNA from stabilized whole blood enables more comprehensive immune gene expression profiling compared to RNA from peripheral blood mononuclear cells
van der Sijde, Fleur, Li, Yunlei, Schraauwen, Rick, de Koning, Willem, van Eijck, Casper H. J, Mustafa, Dana A. M
Published in PloS one (26.06.2020)
Published in PloS one (26.06.2020)
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Journal Article
Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota
Heikema, Astrid P, Horst-Kreft, Deborah, Boers, Stefan A, Jansen, Rick, Hiltemann, Saskia D, de Koning, Willem, Kraaij, Robert, de Ridder, Maria A J, van Houten, Chantal B, Bont, Louis J, Stubbs, Andrew P, Hays, John P
Published in Genes (21.09.2020)
Published in Genes (21.09.2020)
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Journal Article
Spatial genomics reveals a high number and specific location of B cells in the pancreatic ductal adenocarcinoma microenvironment of long-term survivors
Aziz, Hosein M, Saida, Lawlaw, de Koning, Willem, Stubbs, Andrew P, Li, Yunlei, Sideras, Kostandinos, Palacios, Elena, Feliu, Jaime, Mendiola, Marta, van Eijck, Casper H J, Mustafa, Dana A M
Published in Frontiers in immunology (04.01.2023)
Published in Frontiers in immunology (04.01.2023)
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Journal Article
Identification, Validation, and Utilization of Immune Cells in Pancreatic Ductal Adenocarcinoma Based on Marker Genes
de Koning, Willem, Latifi, Diba, Li, Yunlei, van Eijck, Casper H J, Stubbs, Andrew P, Mustafa, Dana A M
Published in Frontiers in immunology (27.04.2021)
Published in Frontiers in immunology (27.04.2021)
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Journal Article
Tumor lineage-specific immune response in brain metastatic disease: opportunities for targeted immunotherapy regimen?
Najjary, Shiva, Kros, Johan M, de Koning, Willem, Vadgama, Disha, Lila, Karishma, Wolf, Janina, Mustafa, Dana A M
Published in Acta neuropathologica communications (15.04.2023)
Published in Acta neuropathologica communications (15.04.2023)
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Journal Article
Identifying Molecular Changes in Early Cervical Cancer Samples of Patients That Developed Metastasis
de Geus, Vera, Ewing-Graham, Patricia C, de Koning, Willem, de Koning, Maurits N C, van den Bosch, Thierry P P, Nigg, Alex L, van Eijck, Casper H J, Jozwiak, Marta, van Beekhuizen, Heleen J, Mustafa, Dana A M
Published in Frontiers in oncology (11.01.2022)
Published in Frontiers in oncology (11.01.2022)
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Journal Article
Analyzing Flow Cytometry or Targeted Gene Expression Data Influences Clinical Discoveries—Profiling Blood Samples of Pancreatic Ductal Adenocarcinoma Patients
de Koning, Willem, van Eijck, Casper W. F, van der Sijde, Fleur, Strijk, Gaby J, Oostvogels, Astrid A. M, Debets, Reno, van Eijck, Casper H. J, Mustafa, Dana A. M
Published in Cancers (31.08.2023)
Published in Cancers (31.08.2023)
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Journal Article
Rintatolimod Induces Antiviral Activities in Human Pancreatic Cancer Cells: Opening for an Anti-COVID-19 Opportunity in Cancer Patients?
Mustafa, Dana A. M., Saida, Lawlaw, Latifi, Diba, Wismans, Leonoor V., de Koning, Willem, Zeneyedpour, Lona, Luider, Theo M., van den Hoogen, Bernadette, van Eijck, Casper H. J.
Published in Cancers (09.06.2021)
Published in Cancers (09.06.2021)
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Journal Article
Immunomodulatory Effects of Stereotactic Body Radiotherapy and Vaccination with Heat-Killed Mycobacterium Obuense (IMM-101) in Patients with Locally Advanced Pancreatic Cancer
van ‘t Land, Freek R, Lau, Sai P, de Koning, Willem, Klaase, Larissa, Vink, Madelief, van Krimpen, Anneloes, Dumas, Jasper, Vadgama, Disha, Nuyttens, Joost J, Mustafa, Dana A. M, Stadhouders, Ralph, Willemsen, Marcella, Stubbs, Andrew P, Aerts, Joachim G, van Eijck, Casper H. J
Published in Cancers (27.10.2022)
Published in Cancers (27.10.2022)
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Journal Article
U-D factorisation of the strengthened discrete-time optimal projection equations
Van Willigenburg, L. Gerard, De Koning, Willem L.
Published in International journal of systems science (03.04.2016)
Published in International journal of systems science (03.04.2016)
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Journal Article
The Role of the Respiratory Microbiome and Viral Presence in Lower Respiratory Tract Infection Severity in the First Five Years of Life
Hoefnagels, Ivo, van de Maat, Josephine, van Kampen, Jeroen J.A., van Rossum, Annemarie, Obihara, Charlie, Tramper-Stranders, Gerdien A., Heikema, Astrid P., de Koning, Willem, van Wermerskerken, Anne-Marie, Horst-Kreft, Deborah, Driessen, Gertjan J.A., Punt, Janine, Smit, Frank J., Stubbs, Andrew, Noordzij, Jeroen G., Hays, John P., Oostenbrink, Rianne
Published in Microorganisms (Basel) (05.07.2021)
Published in Microorganisms (Basel) (05.07.2021)
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Journal Article
Temporal and one-step stabilisability and detectability of discrete-time linear systems
Van Willigenburg, L. Gerard, De Koning, Willem L
Published in IET control theory & applications (01.01.2013)
Published in IET control theory & applications (01.01.2013)
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Journal Article
Modeling piezoelectric actuators
Adriaens, H.J.M.T.S., De Koning, W.L., Banning, R.
Published in IEEE/ASME transactions on mechatronics (01.12.2000)
Published in IEEE/ASME transactions on mechatronics (01.12.2000)
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Journal Article
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
Afgan, Enis, Nekrutenko, Anton, Grüning, Bjórn A, Blankenberg, Daniel, Goecks, Jeremy, Schatz, Michael C, Ostrovsky, Alexander E, Mahmoud, Alexandru, Lonie, Andrew J, Syme, Anna, Bretaudeau, Anthony, Kumar, Anup, Eschenlauer, Arthur C, DeSanto, Assunta D, Guerler, Aysam, Serrano-Solano, Beatriz, Batut, Bérénice, Grüning, Björn A, Langhorst, Bradley W, Carr, Bridget, Raubenolt, Bryan A, Hyde, Cameron J, Bromhead, Catherine J, Barnett, Christopher B, Royaux, Coline, Gallardo, Cristóbal, Fornika, Daniel J, Baker, Dannon, Bouvier, Dave, Clements, Dave, de Lima Morais, David A, Tabernero, David Lopez, Lariviere, Delphine, Nasr, Engy, Zambelli, Federico, Heyl, Florian, Psomopoulos, Fotis, Coppens, Frederik, Price, Gareth R, Cuccuru, Gianmauro, Corguillé, Gildas Le, Von Kuster, Greg, Akbulut, Gulsum Gudukbay, Rasche, Helena, Hotz, Hans-Rudolf, Eguinoa, Ignacio, Makunin, Igor, Ranawaka, Isuru J, Taylor, James P, Joshi, Jayadev, Hillman-Jackson, Jennifer, Chilton, John M, Kamali, Kaivan, Suderman, Keith, Poterlowicz, Krzysztof, Yvan, Le Bras, Lopez-Delisle, Lucille, Sargent, Luke, Bassetti, Madeline E, Tangaro, Marco Antonio, van den Beek, Marius, Čech, Martin, Bernt, Matthias, Fahrner, Matthias, Tekman, Mehmet, Föll, Melanie C, Crusoe, Michael R, Roncoroni, Miguel, Kucher, Natalie, Coraor, Nate, Stoler, Nicholas, Rhodes, Nick, Soranzo, Nicola, Pinter, Niko, Goonasekera, Nuwan A, Moreno, Pablo A, Videm, Pavankumar, Melanie, Petera, Mandreoli, Pietro, Jagtap, Pratik D, Gu, Qiang, Weber, Ralf J M, Lazarus, Ross, Vorderman, Ruben H P, Hiltemann, Saskia, Golitsynskiy, Sergey, Garg, Shilpa, Bray, Simon A, Gladman, Simon L, Leo, Simone, Mehta, Subina P, Griffin, Timothy J, Jalili, Vahid, Yves, Vandenbrouck, Wen, Victor, Nagampalli, Vijay K, Bacon, Wendi A, de Koning, Willem, Maier, Wolfgang, Briggs, Peter J
Published in Nucleic acids research (05.07.2022)
Published in Nucleic acids research (05.07.2022)
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Journal Article
On the periodic behavior of PWM DC-DC converters
van der Woude, J.W., de Koning, W.L., Fuad, Y.
Published in IEEE transactions on power electronics (01.07.2002)
Published in IEEE transactions on power electronics (01.07.2002)
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Journal Article