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Bulk RNA Sequencing-Based Drug Repurposing in Systemic Lupus Erythematosus
Abdali, Nayereh, Tahmasebian, Shahram, Vaghf, Atena
Published in Iranian biomedical journal (01.12.2024)
Published in Iranian biomedical journal (01.12.2024)
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Integrated Analysis of Single-Cell and Bulk RNA Sequencing Data Reveals Memory-like NK Cell Subset Associated with Mycobacterium tuberculosis Latency
Shekarkar Azgomi, Mojtaba, Badami, Giusto Davide, Lo Pizzo, Marianna, Tamburini, Bartolo, Dieli, Costanza, La Manna, Marco Pio, Dieli, Francesco, Caccamo, Nadia
Published in Cells (Basel, Switzerland) (06.02.2024)
Published in Cells (Basel, Switzerland) (06.02.2024)
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Integrated Analysis of Single-Cell and Bulk RNA Sequencing Data Reveals Memory-like NK Cell Subset Associated with IMycobacterium tuberculosis/I Latency
Shekarkar Azgomi, Mojtaba, Badami, Giusto Davide, Lo Pizzo, Marianna, Tamburini, Bartolo, Dieli, Costanza, La Manna, Marco Pio, Dieli, Francesco, Caccamo, Nadia
Published in Cells (Basel, Switzerland) (01.02.2024)
Published in Cells (Basel, Switzerland) (01.02.2024)
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Airway Macrophages Encompass Transcriptionally and Functionally Distinct Subsets Altered by Smoking
Liégeois, Maude, Bai, Qiang, Fievez, Laurence, Pirottin, Dimitri, Legrand, Céline, Guiot, Julien, Schleich, Florence, Corhay, Jean-Louis, Louis, Renaud, Marichal, Thomas, Bureau, Fabrice
Published in American journal of respiratory cell and molecular biology (01.08.2022)
Published in American journal of respiratory cell and molecular biology (01.08.2022)
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Genetic Signatures From RNA Sequencing of Pediatric Localized Scleroderma Skin
Mirizio, Emily, Liu, Christopher, Yan, Qi, Waltermire, Julia, Mandel, Roosha, Schollaert, Kaila L., Konnikova, Liza, Wang, Xinjun, Chen, Wei, Torok, Kathryn S.
Published in Frontiers in pediatrics (07.06.2021)
Published in Frontiers in pediatrics (07.06.2021)
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Temporal specificity and heterogeneity of Drosophila immune cells
Cattenoz, Pierre B, Sakr, Rosy, Pavlidaki, Alexia, Delaporte, Claude, Riba, Andrea, Molina, Nacho, Hariharan, Nivedita, Mukherjee, Tina, Giangrande, Angela
Published in The EMBO journal (17.06.2020)
Published in The EMBO journal (17.06.2020)
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Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis
Reyfman, Paul A., Walter, James M., Joshi, Nikita, Anekalla, Kishore R., McQuattie-Pimentel, Alexandra C., Chiu, Stephen, Fernandez, Ramiro, Akbarpour, Mahzad, Chen, Ching-I, Ren, Ziyou, Verma, Rohan, Abdala-Valencia, Hiam, Nam, Kiwon, Chi, Monica, Han, SeungHye, Gonzalez-Gonzalez, Francisco J., Soberanes, Saul, Watanabe, Satoshi, Williams, Kinola J. N., Flozak, Annette S., Nicholson, Trevor T., Morgan, Vince K., Winter, Deborah R., Hinchcliff, Monique, Hrusch, Cara L., Guzy, Robert D., Bonham, Catherine A., Sperling, Anne I., Bag, Remzi, Hamanaka, Robert B., Mutlu, Gökhan M., Yeldandi, Anjana V., Marshall, Stacy A., Shilatifard, Ali, Amaral, Luis A. N., Perlman, Harris, Sznajder, Jacob I., Argento, A. Christine, Gillespie, Colin T., Dematte, Jane, Jain, Manu, Singer, Benjamin D., Ridge, Karen M., Lam, Anna P., Bharat, Ankit, Bhorade, Sangeeta M., Gottardi, Cara J., Budinger, G. R. Scott, Misharin, Alexander V.
Published in American journal of respiratory and critical care medicine (15.06.2019)
Published in American journal of respiratory and critical care medicine (15.06.2019)
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A pathogenic and clonally expanded B cell transcriptome in active multiple sclerosis
Ramesh, Akshaya, Schubert, Ryan D., Greenfield, Ariele L., Dandekar, Ravi, Loudermilk, Rita, Sabatino, Joseph J., Koelzer, Matthew T., Tran, Edwina B., Koshal, Kanishka, Kim, Kicheol, Pröbstel, Anne-Katrin, Banerji, Debarko, Guo, Chu-Yueh, Green, Ari J., Bove, Riley M., DeRisi, Joseph L., Gelfand, Jeffrey M., Cree, Bruce A. C., Zamvil, Scott S., Baranzini, Sergio E., Hauser, Stephen L., Wilson, Michael R.
Published in Proceedings of the National Academy of Sciences - PNAS (15.09.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (15.09.2020)
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RNA Sequencing Analysis of CD4+ T Cells Exposed to Airway Fluid From Children With Pediatric Acute Respiratory Distress Syndrome
Ripple, Michael J., Huang, Min, Stephenson, Susan T., Mohammad, Ahmad F., Tidwell, Mallory, Fitzpatrick, Anne M., Kamaleswaran, Rishikesan, Grunwell, Jocelyn R.
Published in Critical care explorations (01.07.2023)
Published in Critical care explorations (01.07.2023)
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Spliceosome component Usp39 contributes to hepatic lipid homeostasis through the regulation of autophagy
Cui, Donghai, Wang, Zixiang, Dang, Qianli, Wang, Jing, Qin, Junchao, Song, Jianping, Zhai, Xiangyu, Zhou, Yachao, Zhao, Ling, Lu, Gang, Liu, Hongbin, Liu, Gang, Liu, Runping, Shao, Changshun, Zhang, Xiyu, Liu, Zhaojian
Published in Nature communications (03.11.2023)
Published in Nature communications (03.11.2023)
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sNucConv: A bulk RNA-seq deconvolution method trained on single-nucleus RNA-seq data to estimate cell-type composition of human adipose tissues
Sorek, Gil, Haim, Yulia, Chalifa-Caspi, Vered, Lazarescu, Or, Ziv-Agam, Maya, Hagemann, Tobias, Nono Nankam, Pamela Arielle, Blüher, Matthias, Liberty, Idit F., Dukhno, Oleg, Kukeev, Ivan, Yeger-Lotem, Esti, Rudich, Assaf, Levin, Liron
Published in iScience (19.07.2024)
Published in iScience (19.07.2024)
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E-cigarette vapor extract alters human eosinophil gene expression in an effect mediated by propylene glycol, glycerin, and nicotine
Hogan, Nicholas T, Castaneda-Castro, Francisco Emmanuel, Logandha Ramamoorthy Premlal, Ashmitaa, Brickner, Howard, Mondal, Monalisa, Herrera-De La Mata, Sara, Vijayanand, Pandurangan, Crotty Alexander, Laura E, Seumois, Gregory, Akuthota, Praveen
Published in Journal of leukocyte biology (27.11.2024)
Published in Journal of leukocyte biology (27.11.2024)
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Chronic airway epithelial hypoxia exacerbates injury in muco-obstructive lung disease through mucus hyperconcentration
Mikami, Yu, Grubb, Barbara R, Rogers, Troy D, Dang, Hong, Asakura, Takanori, Kota, Pradeep, Gilmore, Rodney C, Okuda, Kenichi, Morton, Lisa C, Sun, Ling, Chen, Gang, Wykoff, Jason A, Ehre, Camille, Vilar, Juan, van Heusden, Catharina, Livraghi-Butrico, Alessandra, Gentzsch, Martina, Button, Brian, Stutts, M Jackson, Randell, Scott H, O'Neal, Wanda K, Boucher, Richard C
Published in Science translational medicine (07.06.2023)
Published in Science translational medicine (07.06.2023)
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Associations of psychiatric disease and ageing with FKBP5 expression converge on superficial layer neurons of the neocortex
Matosin, Natalie, Arloth, Janine, Czamara, Darina, Edmond, Katrina Z., Maitra, Malosree, Fröhlich, Anna S., Martinelli, Silvia, Kaul, Dominic, Bartlett, Rachael, Curry, Amber R., Gassen, Nils C., Hafner, Kathrin, Müller, Nikola S., Worf, Karolina, Rehawi, Ghalia, Nagy, Corina, Halldorsdottir, Thorhildur, Cruceanu, Cristiana, Gagliardi, Miriam, Gerstner, Nathalie, Ködel, Maik, Murek, Vanessa, Ziller, Michael J., Scarr, Elizabeth, Tao, Ran, Jaffe, Andrew E., Arzberger, Thomas, Falkai, Peter, Kleinmann, Joel E., Weinberger, Daniel R., Mechawar, Naguib, Schmitt, Andrea, Dean, Brian, Turecki, Gustavo, Hyde, Thomas M., Binder, Elisabeth B.
Published in Acta neuropathologica (01.04.2023)
Published in Acta neuropathologica (01.04.2023)
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In cis “benign” SOCS1 variants linked to enhanced interferon signaling and autoimmunity
Du, Yan, Brodeur, Kailey E., Hsu, Evan, Chen, Liang, Chen, Qian, Liu, Meng, Cheng, Qi, Rosen, Seymour, Michniacki, Thomas F., Chou, Janet, Lo, Mindy S., Platt, Craig D., Lee, Pui Y.
Published in Journal of autoimmunity (01.11.2023)
Published in Journal of autoimmunity (01.11.2023)
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