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scRNA-seq Can Identify Different Cell Populations in Ovarian Cancer Bulk RNA-seq Experiments
Gabrilovich, Sofia, Devor, Eric, Cardillo, Nicholas, Bender, David, Goodheart, Michael, Gonzalez-Bosquet, Jesus
Published in International journal of molecular sciences (04.08.2025)
Published in International journal of molecular sciences (04.08.2025)
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An augmented GSNMF model for complete deconvolution of bulk RNA-seq data
Li, Shaoyu, Xu, Su, Wang, Xue, Ertekin-Taner, Nilüfer, Chen, Duan
Published in Mathematical biosciences and engineering : MBE (14.03.2025)
Published in Mathematical biosciences and engineering : MBE (14.03.2025)
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Establishment and validation of a novel CD8+ T cell-associated prognostic signature for predicting clinical outcomes and immunotherapy response in hepatocellular carcinoma via integrating single-cell RNA-seq and bulk RNA-seq
Qu, Caihao, Yan, Xin, Wei, Yujie, Tang, Futian, Li, Yumin
Published in Discover. Oncology (20.06.2024)
Published in Discover. Oncology (20.06.2024)
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sNucConv: A bulk RNA-seq deconvolution method trained on single-nucleus RNA-seq data to estimate cell-type composition of human adipose tissues
Sorek, Gil, Haim, Yulia, Chalifa-Caspi, Vered, Lazarescu, Or, Ziv-Agam, Maya, Hagemann, Tobias, Nono Nankam, Pamela Arielle, Blüher, Matthias, Liberty, Idit F., Dukhno, Oleg, Kukeev, Ivan, Yeger-Lotem, Esti, Rudich, Assaf, Levin, Liron
Published in iScience (19.07.2024)
Published in iScience (19.07.2024)
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Integrated Analysis of Single-Cell RNA-Seq and Bulk RNA-Seq Combined with Multiple Machine Learning Identified a Novel Immune Signature in Diabetic Nephropathy
Peng, Yue-Ling, Zhang, Yan, Pang, Lin, Dong, Ya-Fang, Li, Mu-Ye, Liao, Hui, Li, Rong-Shan
Published in Diabetes, metabolic syndrome and obesity (30.06.2023)
Published in Diabetes, metabolic syndrome and obesity (30.06.2023)
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Airway Macrophages Encompass Transcriptionally and Functionally Distinct Subsets Altered by Smoking
Liégeois, Maude, Bai, Qiang, Fievez, Laurence, Pirottin, Dimitri, Legrand, Céline, Guiot, Julien, Schleich, Florence, Corhay, Jean-Louis, Louis, Renaud, Marichal, Thomas, Bureau, Fabrice
Published in American journal of respiratory cell and molecular biology (01.08.2022)
Published in American journal of respiratory cell and molecular biology (01.08.2022)
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Dysregulation of Iron Metabolism-Linked Genes at Myocardial Tissue and Cell Levels in Dilated Cardiomyopathy
Massaiu, Ilaria, Campodonico, Jeness, Mapelli, Massimo, Salvioni, Elisabetta, Valerio, Vincenza, Moschetta, Donato, Myasoedova, Veronika A., Cappellini, Maria Domenica, Pompilio, Giulio, Poggio, Paolo, Agostoni, Piergiuseppe
Published in International journal of molecular sciences (02.02.2023)
Published in International journal of molecular sciences (02.02.2023)
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Bulk tissue cell type deconvolution with multi-subject single-cell expression reference
Wang, Xuran, Park, Jihwan, Susztak, Katalin, Zhang, Nancy R., Li, Mingyao
Published in Nature communications (22.01.2019)
Published in Nature communications (22.01.2019)
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A synthesis and subgroup analysis of the eosinophilic esophagitis tissue transcriptome
Jacobse, Justin, Brown, Rachel, Revetta, Frank, Vaezi, Michael, Buendia, Matthew A., Williams, Christopher S., Higginbotham, Tina, Washington, M. Kay, Goettel, Jeremy, Hiremath, Girish, Choksi, Yash A.
Published in Journal of allergy and clinical immunology (01.03.2024)
Published in Journal of allergy and clinical immunology (01.03.2024)
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The single cell immunogenomic landscape after neoadjuvant immunotherapy combined chemotherapy in esophageal squamous cell carcinoma
Wang, Zheyi, Zhao, Yue, Wo, Yang, Peng, Yizhou, Hu, Weilei, Wu, Zhigang, Liu, Pengcheng, Shang, Yan, Liu, Chunnan, Chen, Xiao, Huang, Kan, Chen, Yuting, Hong, Hui, Li, Fei, Sun, Yihua
Published in Cancer letters (01.07.2024)
Published in Cancer letters (01.07.2024)
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Single nuclei profiling identifies cell specific markers of skeletal muscle aging, frailty, and senescence
Perez, Kevin, Ciotlos, Serban, McGirr, Julia, Limbad, Chandani, Doi, Ryosuke, Nederveen, Joshua P., Nilsson, Mats I., Winer, Daniel A., Evans, William, Tarnopolsky, Mark, Campisi, Judith, Melov, Simon
Published in Aging (Albany, NY.) (13.12.2022)
Published in Aging (Albany, NY.) (13.12.2022)
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Integrated Analysis of Single-Cell and Bulk RNA Sequencing Data Reveals Memory-like NK Cell Subset Associated with Mycobacterium tuberculosis Latency
Shekarkar Azgomi, Mojtaba, Badami, Giusto Davide, Lo Pizzo, Marianna, Tamburini, Bartolo, Dieli, Costanza, La Manna, Marco Pio, Dieli, Francesco, Caccamo, Nadia
Published in Cells (Basel, Switzerland) (06.02.2024)
Published in Cells (Basel, Switzerland) (06.02.2024)
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STAT3-orchestrated gene expression signatures and tumor microenvironment in esophageal squamous cell carcinoma uncovered by single-cell sequencing
Pang, Shilian, Chen, Yurao, Zheng, Zemao, Wang, Luoshai, Chen, Ronghuai, He, Ming, Zhao, Xiang, Yao, Juan, Jin, Liyan
Published in Biochimica et biophysica acta. General subjects (01.05.2025)
Published in Biochimica et biophysica acta. General subjects (01.05.2025)
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TNFR1-mediated senescence and lack of TNFR2-signaling limit human intervertebral disc cell repair potential in degenerative conditions
Gansau, Jennifer, Grossi, Elena, Rodriguez, Levon, Wang, Minghui, Laudier, Damien M., Chaudhary, Saad, Hecht, Andrew C., Fu, Wenyu, Sebra, Robert, Liu, Chuan-Ju, Iatridis, James C.
Published in Osteoarthritis and cartilage (01.07.2025)
Published in Osteoarthritis and cartilage (01.07.2025)
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Identification of potential blood biomarkers for early diagnosis of Alzheimer’s disease through RNA sequencing analysis
Shigemizu, Daichi, Mori, Taiki, Akiyama, Shintaro, Higaki, Sayuri, Watanabe, Hiroshi, Sakurai, Takashi, Niida, Shumpei, Ozaki, Kouichi
Published in Alzheimer's research & therapy (16.07.2020)
Published in Alzheimer's research & therapy (16.07.2020)
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