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Batch-effect detection, correction and characterisation in Illumina HumanMethylation450 and MethylationEPIC BeadChip array data
Ross, Jason P., van Dijk, Susan, Phang, Melinda, Skilton, Michael R., Molloy, Peter L., Oytam, Yalchin
Published in Clinical epigenetics (29.04.2022)
Published in Clinical epigenetics (29.04.2022)
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WaveICA 2.0: a novel batch effect removal method for untargeted metabolomics data without using batch information
Deng, Kui, Zhao, Falin, Rong, Zhiwei, Cao, Lei, Zhang, Liuchao, Li, Kang, Hou, Yan, Zhu, Zheng-Jiang
Published in Metabolomics (01.10.2021)
Published in Metabolomics (01.10.2021)
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Correction of Batch Effect in Gut Microbiota Profiling of ASD Cohorts from Different Geographical Origins
Scanu, Matteo, Del Chierico, Federica, Marsiglia, Riccardo, Toto, Francesca, Guerrera, Silvia, Valeri, Giovanni, Vicari, Stefano, Putignani, Lorenza
Published in Biomedicines (01.10.2024)
Published in Biomedicines (01.10.2024)
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WaveICA: A novel algorithm to remove batch effects for large-scale untargeted metabolomics data based on wavelet analysis
Deng, Kui, Zhang, Fan, Tan, Qilong, Huang, Yue, Song, Wei, Rong, Zhiwei, Zhu, Zheng-Jiang, Li, Kang, Li, Zhenzi
Published in Analytica chimica acta (11.07.2019)
Published in Analytica chimica acta (11.07.2019)
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Variation in the metagenomic analysis of fecal microbiome composition calls for a standardized operating approach
Xu, Zhilu, Yeoh, Yun Kit, Tun, Hein M., Fei, Na, Zhang, Jingwan, Morrison, Mark, Kamm, Michael A., Yu, Jun, Chan, Francis Ka Leung, Ng, Siew C.
Published in Microbiology spectrum (30.10.2024)
Published in Microbiology spectrum (30.10.2024)
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Deep Learning‐Driven Transformation: A Novel Approach for Mitigating Batch Effects in Diffusion MRI Beyond Traditional Harmonization
Wada, Akihiko, Akashi, Toshiaki, Hagiwara, Akifumi, Nishizawa, Mitsuo, Shimoji, Keigo, Kikuta, Junko, Maekawa, Tomoko, Sano, Katsuhiro, Kamagata, Koji, Nakanishi, Atsushi, Aoki, Shigeki
Published in Journal of magnetic resonance imaging (01.08.2024)
Published in Journal of magnetic resonance imaging (01.08.2024)
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Statistical Analysis of Data Repeatability Measures
Wang, Zeyi, Bridgeford, Eric, Wang, Shangsi, Vogelstein, Joshua T., Caffo, Brian
Published in International statistical review (09.08.2024)
Published in International statistical review (09.08.2024)
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Removing batch effects from purified plasma cell gene expression microarrays with modified ComBat
Stein, Caleb K, Qu, Pingping, Epstein, Joshua, Buros, Amy, Rosenthal, Adam, Crowley, John, Morgan, Gareth, Barlogie, Bart
Published in BMC bioinformatics (25.02.2015)
Published in BMC bioinformatics (25.02.2015)
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RMComBat: A Batch Effect Correction Algorithm for Repeated Measurement Sequencing Data to Prevent Overcorrection
Liu, Yuqian, Wei, Zhaoxing, Wang, Jiayin, Zhu, Xiaoyan, Liu, Ruoyu, Wang, Xuwen, Wang, Shenjie, Lai, Xin
Published in Proceedings (IEEE International Conference on Bioinformatics and Biomedicine) (03.12.2024)
Published in Proceedings (IEEE International Conference on Bioinformatics and Biomedicine) (03.12.2024)
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SNP genotype calling and quality control for multi-batch-based studies
Seo, Sujin, Park, Kyungtaek, Lee, Jang Jae, Choi, Kyu Yeong, Lee, Kun Ho, Won, Sungho
Published in Genes & genomics (01.08.2019)
Published in Genes & genomics (01.08.2019)
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Statistical modelling of measurement error in wet chemistry soil data
van Leeuwen, Cynthia C. E., Mulder, Vera L., Batjes, Niels H., Heuvelink, Gerard B. M.
Published in European journal of soil science (01.01.2022)
Published in European journal of soil science (01.01.2022)
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Stratified randomization controls better for batch effects in 450K methylation analysis: a cautionary tale
Buhule, Olive D., Minster, Ryan L., Hawley, Nicola L., Medvedovic, Mario, Sun, Guangyun, Viali, Satupaitea, Deka, Ranjan, McGarvey, Stephen T., Weeks, Daniel E.
Published in Frontiers in genetics (13.10.2014)
Published in Frontiers in genetics (13.10.2014)
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Online application for the diagnosis of atherosclerosis by six genes
Zhao, Zunlan, Chen, Shouhang, Wei, Hongzhao, Ma, Weile, Shi, Weili, Si, Yixin, Wang, Jun, Wang, Liuyi, Li, Xiqing
Published in PloS one (10.04.2024)
Published in PloS one (10.04.2024)
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Transcriptomic autophagy-related gene signature investigation for type 2 diabetes in Mediterranean subjects
Gimenez-Alba, Ignacio M., Coltell, Oscar, Fernandez-Carrión, Rebeca, Sorlí, José V., Asensio, Eva M., Pascual, Eva C., Ortega-Azorín, Carolina, Corella, Dolores
Published in The American heart journal (01.12.2021)
Published in The American heart journal (01.12.2021)
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Harmonized-Multinational qEEG norms (HarMNqEEG)
Li, Min, Wang, Ying, Lopez-Naranjo, Carlos, Hu, Shiang, Reyes, Ronaldo César García, Paz-Linares, Deirel, Areces-Gonzalez, Ariosky, Hamid, Aini Ismafairus Abd, Evans, Alan C., Savostyanov, Alexander N., Calzada-Reyes, Ana, Villringer, Arno, Tobon-Quintero, Carlos A., Garcia-Agustin, Daysi, Yao, Dezhong, Dong, Li, Aubert-Vazquez, Eduardo, Reza, Faruque, Razzaq, Fuleah Abdul, Omar, Hazim, Abdullah, Jafri Malin, Galler, Janina R., Ochoa-Gomez, John F., Prichep, Leslie S., Galan-Garcia, Lidice, Morales-Chacon, Lilia, Valdes-Sosa, Mitchell J., Tröndle, Marius, Zulkifly, Mohd Faizal Mohd, Abdul Rahman, Muhammad Riddha Bin, Milakhina, Natalya S., Langer, Nicolas, Rudych, Pavel, Koenig, Thomas, Virues-Alba, Trinidad A., Lei, Xu, Bringas-Vega, Maria L., Bosch-Bayard, Jorge F., Valdes-Sosa, Pedro Antonio
Published in NeuroImage (Orlando, Fla.) (01.08.2022)
Published in NeuroImage (Orlando, Fla.) (01.08.2022)
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