Pathways to cellular supremacy in biocomputing
Grozinger, Lewis, Amos, Martyn, Gorochowski, Thomas E, Carbonell, Pablo, Oyarzún, Diego A, Stoof, Ruud, Fellermann, Harold, Zuliani, Paolo, Tas, Huseyin, Goñi-Moreno, Angel
Published in Nature communications (20.11.2019)
Published in Nature communications (20.11.2019)
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Predicting partner fitness based on spatial structuring in a light-driven microbial community
Sakkos, Jonathan K, Santos-Merino, María, Kokarakis, Emmanuel J, Li, Bowen, Fuentes-Cabrera, Miguel, Zuliani, Paolo, Ducat, Daniel C
Published in PLoS computational biology (01.05.2023)
Published in PLoS computational biology (01.05.2023)
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Edmund Melson Clarke, Jr. (1945–2020)
Gao, Sicun, Grumberg, Orna, Zuliani, Paolo
Published in Formal methods in system design (01.06.2022)
Published in Formal methods in system design (01.06.2022)
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NUFEB: A massively parallel simulator for individual-based modelling of microbial communities
Li, Bowen, Taniguchi, Denis, Gedara, Jayathilake Pahala, Gogulancea, Valentina, Gonzalez-Cabaleiro, Rebeca, Chen, Jinju, McGough, Andrew Stephen, Ofiteru, Irina Dana, Curtis, Thomas P, Zuliani, Paolo
Published in PLoS computational biology (01.12.2019)
Published in PLoS computational biology (01.12.2019)
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A mechanistic Individual-based Model of microbial communities
Jayathilake, Pahala Gedara, Gupta, Prashant, Li, Bowen, Madsen, Curtis, Oyebamiji, Oluwole, González-Cabaleiro, Rebeca, Rushton, Steve, Bridgens, Ben, Swailes, David, Allen, Ben, McGough, A Stephen, Zuliani, Paolo, Ofiteru, Irina Dana, Wilkinson, Darren, Chen, Jinju, Curtis, Tom
Published in PloS one (03.08.2017)
Published in PloS one (03.08.2017)
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Editorial: Combining machine learning, computational modeling, and high throughput experimentation to accelerate discovery in systems microbiology
Fuentes-Cabrera, Miguel, Zuliani, Paolo, Li, Bowen, Wilmoth, Jared L., Bilbao, Aivett, Dohnalkova, Alice C.
Published in Frontiers in microbiology (17.07.2024)
Published in Frontiers in microbiology (17.07.2024)
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Individual Based Model Links Thermodynamics, Chemical Speciation and Environmental Conditions to Microbial Growth
Gogulancea, Valentina, González-Cabaleiro, Rebeca, Li, Bowen, Taniguchi, Denis, Jayathilake, Pahala Gedara, Chen, Jinju, Wilkinson, Darren, Swailes, David, McGough, Andrew Stephen, Zuliani, Paolo, Ofiteru, Irina Dana, Curtis, Thomas P
Published in Frontiers in microbiology (13.08.2019)
Published in Frontiers in microbiology (13.08.2019)
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Statistical model checking for biological applications
Zuliani, Paolo
Published in International journal on software tools for technology transfer (01.08.2015)
Published in International journal on software tools for technology transfer (01.08.2015)
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An Empirical Exploration of the Distributions of the Chidamber and Kemerer Object-Oriented Metrics Suite
Succi, Giancarlo, Pedrycz, Witold, Djokic, Snezana, Zuliani, Paolo, Russo, Barbara
Published in Empirical software engineering : an international journal (01.01.2005)
Published in Empirical software engineering : an international journal (01.01.2005)
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Cooperation between autotrophic and heterotrophic denitrifiers under low C/N ratios revealed by individual-based modelling
Xing, Wei, Gao, Daoqing, Wang, Yan, Li, Bowen, Zhang, Zexi, Zuliani, Paolo, Yao, Hong, Curtis, Thomas P.
Published in The Science of the total environment (15.04.2024)
Published in The Science of the total environment (15.04.2024)
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CFD–DEM modelling of biofilm streamer oscillations and their cohesive failure in fluid flow
Xia, Yuqing, Jayathilake, Pahala G., Li, Bowen, Zuliani, Paolo, Chen, Jinju
Published in Biotechnology and bioengineering (01.02.2021)
Published in Biotechnology and bioengineering (01.02.2021)
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Coupled CFD‐DEM modeling to predict how EPS affects bacterial biofilm deformation, recovery and detachment under flow conditions
Xia, Yuqing, Jayathilake, Pahala G., Li, Bowen, Zuliani, Paolo, Deehan, David, Longyear, Jennifer, Stoodley, Paul, Chen, Jinju
Published in Biotechnology and bioengineering (01.09.2022)
Published in Biotechnology and bioengineering (01.09.2022)
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Modelling bacterial twitching in fluid flows: a CFD-DEM approach
Jayathilake, Pahala Gedara, Li, Bowen, Zuliani, Paolo, Curtis, Tom, Chen, Jinju
Published in Scientific reports (10.10.2019)
Published in Scientific reports (10.10.2019)
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