Hyperosmotic stress alters the RNA polymerase II interactome and induces readthrough transcription despite widespread transcriptional repression
Rosa-Mercado, Nicolle A., Zimmer, Joshua T., Apostolidi, Maria, Rinehart, Jesse, Simon, Matthew D., Steitz, Joan A.
Published in Molecular cell (04.02.2021)
Published in Molecular cell (04.02.2021)
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Journal Article
Functional elements of the cis-regulatory lincRNA-p21
Winkler, Lauren, Jimenez, Maria, Zimmer, Joshua T., Williams, Adam, Simon, Matthew D., Dimitrova, Nadya
Published in Cell reports (Cambridge) (19.04.2022)
Published in Cell reports (Cambridge) (19.04.2022)
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Journal Article
ALKBH5 modulates hematopoietic stem and progenitor cell energy metabolism through m6A modification-mediated RNA stability control
Gao, Yimeng, Zimmer, Joshua T., Vasic, Radovan, Liu, Chengyang, Gbyli, Rana, Zheng, Shu-Jian, Patel, Amisha, Liu, Wei, Qi, Zhihong, Li, Yaping, Nelakanti, Raman, Song, Yuanbin, Biancon, Giulia, Xiao, Andrew Z., Slavoff, Sarah, Kibbey, Richard G., Flavell, Richard A., Simon, Matthew D., Tebaldi, Toma, Li, Hua-Bing, Halene, Stephanie
Published in Cell reports (Cambridge) (31.10.2023)
Published in Cell reports (Cambridge) (31.10.2023)
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Journal Article
Precision analysis of mutant U2AF1 activity reveals deployment of stress granules in myeloid malignancies
Biancon, Giulia, Joshi, Poorval, Zimmer, Joshua T., Hunck, Torben, Gao, Yimeng, Lessard, Mark D., Courchaine, Edward, Barentine, Andrew E.S., Machyna, Martin, Botti, Valentina, Qin, Ashley, Gbyli, Rana, Patel, Amisha, Song, Yuanbin, Kiefer, Lea, Viero, Gabriella, Neuenkirchen, Nils, Lin, Haifan, Bewersdorf, Joerg, Simon, Matthew D., Neugebauer, Karla M., Tebaldi, Toma, Halene, Stephanie
Published in Molecular cell (17.03.2022)
Published in Molecular cell (17.03.2022)
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Journal Article
Transcription elongation defects link oncogenic SF3B1 mutations to targetable alterations in chromatin landscape
Boddu, Prajwal C., Gupta, Abhishek K., Roy, Rahul, De La Peña Avalos, Bárbara, Olazabal-Herrero, Anne, Neuenkirchen, Nils, Zimmer, Joshua T., Chandhok, Namrata S., King, Darren, Nannya, Yasuhito, Ogawa, Seishi, Lin, Haifan, Simon, Matthew D., Dray, Eloise, Kupfer, Gary M., Verma, Amit, Neugebauer, Karla M., Pillai, Manoj M.
Published in Molecular cell (18.04.2024)
Published in Molecular cell (18.04.2024)
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Journal Article
Acetyl-methyllysine marks chromatin at active transcription start sites
Lu-Culligan, William J., Connor, Leah J., Xie, Yixuan, Ekundayo, Babatunde E., Rose, Brendan T., Machyna, Martin, Pintado-Urbanc, Andreas P., Zimmer, Joshua T., Vock, Isaac W., Bhanu, Natarajan V., King, Megan C., Garcia, Benjamin A., Bleichert, Franziska, Simon, Matthew D.
Published in Nature (London) (05.10.2023)
Published in Nature (London) (05.10.2023)
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Journal Article
Targeted Degradation of mRNA Decapping Enzyme DcpS by a VHL-Recruiting PROTAC
Swartzel, Jake C., Bond, Michael J., Pintado-Urbanc, Andreas P., Daftary, Mehana, Krone, Mackenzie W., Douglas, Todd, Carder, Evan J., Zimmer, Joshua T., Maeda, Takahiro, Simon, Matthew D., Crews, Craig M.
Published in ACS chemical biology (15.07.2022)
Published in ACS chemical biology (15.07.2022)
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Journal Article
The ubiquitin-protein ligase E6AP/UBE3A supports early encephalomyocarditis virus replication
Carmody, Marybeth, Zimmer, Joshua T., Cushman, Camille H., Nguyen, Thao, Lawson, T. Glen
Published in Virus research (02.07.2018)
Published in Virus research (02.07.2018)
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Journal Article
ALKBH5 Modulates Hematopoietic Stem and Progenitor Cell Energy Metabolism through m 6a Modification-Mediated RNA Stability
Gao, Yimeng, Zimmer, Joshua T, Vasic, Radovan, Liu, Chengyang, Gbyli, Rana, Zheng, Shu-Jian, Patel, Amisha, LIU, Wei, Nelakanti, Raman, Song, Yuanbin, Biancon, Giulia, Xiao, Andrew, Slavoff, Sarah, Simon, Matthew D, Flavell, Richard, Tebaldi, Toma, Li, Hua-Bing, Halene, Stephanie
Published in Blood (23.11.2021)
Published in Blood (23.11.2021)
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Journal Article
U2AF1 Mutations Enhance Stress Granule Response in Myeloid Malignancies
Biancon, Giulia, Joshi, Poorval, Zimmer, Joshua T, Hunck, Torben, Gao, Yimeng, Lessard, Mark D, Courchaine, Edward, Barentine, Andrew ES, Machyna, Martin, Botti, Valentina, Qin, Ashley, Gbyli, Rana, Patel, Amisha, Song, Yuanbin, Kiefer, Lea, Viero, Gabriella, Neuenkirchen, Nils, Lin, Haifan, Bewersdorf, Joerg, Simon, Matthew D, Neugebauer, Karla M, Tebaldi, Toma, Halene, Stephanie
Published in Blood (23.11.2021)
Published in Blood (23.11.2021)
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Journal Article
ALKBH5 modulates hematopoietic stem and progenitor cell energy metabolism through m 6 A modification-mediated RNA stability control
Gao, Yimeng, Zimmer, Joshua T, Vasic, Radovan, Liu, Chengyang, Gbyli, Rana, Zheng, Shu-Jian, Patel, Amisha, Liu, Wei, Qi, Zhihong, Li, Yaping, Nelakanti, Raman, Song, Yuanbin, Biancon, Giulia, Xiao, Andrew Z, Slavoff, Sarah, Kibbey, Richard G, Flavell, Richard A, Simon, Matthew D, Tebaldi, Toma, Li, Hua-Bing, Halene, Stephanie
Published in Cell reports (Cambridge) (31.10.2023)
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Published in Cell reports (Cambridge) (31.10.2023)
Journal Article
Transcription elongation defects link oncogenic splicing factor mutations to targetable alterations in chromatin landscape
Boddu, Prajwal C, Gupta, Abhishek, Roy, Rahul, De La Pena Avalos, Barbara, Herrero, Ane Olazabal, Neuenkirchen, Nils, Zimmer, Josh, Chandhok, Namrata, King, Darren, Nannya, Yashuhito, Ogawa, Seishi, Lin, Haifan, Simon, Matthew, Dray, Eloise, Kupfer, Gary, Verma, Amit K, Neugebauer, Karla M, Pillai, Manoj M
Published in bioRxiv (26.02.2023)
Published in bioRxiv (26.02.2023)
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Journal Article
Hyperosmotic stress induces downstream-of-gene transcription and alters the RNA Polymerase II interactome despite widespread transcriptional repression
Rosa-Mercado, Nicolle A, Zimmer, Joshua T, Apostolidi, Maria, Rinehart, Jesse, Simon, Matthew D, Steitz, Joan A
Published in bioRxiv (02.07.2020)
Published in bioRxiv (02.07.2020)
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