Satb1 integrates DNA binding site geometry and torsional stress to differentially target nucleosome-dense regions
Ghosh, Rajarshi P, Shi, Quanming, Yang, Linfeng, Reddick, Michael P, Nikitina, Tatiana, Zhurkin, Victor B, Fordyce, Polly, Stasevich, Timothy J, Chang, Howard Y, Greenleaf, William J, Liphardt, Jan T
Published in Nature communications (19.07.2019)
Published in Nature communications (19.07.2019)
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Regulation of chromatin folding by conformational variations of nucleosome linker DNA
Buckwalter, Jenna M, Norouzi, Davood, Harutyunyan, Anna, Zhurkin, Victor B, Grigoryev, Sergei A
Published in Nucleic acids research (19.09.2017)
Published in Nucleic acids research (19.09.2017)
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Journal Article
DNA topology in chromatin is defined by nucleosome spacing
Nikitina, Tatiana, Norouzi, Davood, Grigoryev, Sergei A, Zhurkin, Victor B
Published in Science advances (01.10.2017)
Published in Science advances (01.10.2017)
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Transcriptional activation of yeast genes disrupts intragenic nucleosome phasing
Cui, Feng, Cole, Hope A, Clark, David J, Zhurkin, Victor B
Published in Nucleic acids research (01.11.2012)
Published in Nucleic acids research (01.11.2012)
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Journal Article
Combined Micrococcal Nuclease and Exonuclease III Digestion Reveals Precise Positions of the Nucleosome Core/Linker Junctions: Implications for High-Resolution Nucleosome Mapping
Nikitina, Tatiana, Wang, Difei, Gomberg, Misha, Grigoryev, Sergei A., Zhurkin, Victor B.
Published in Journal of molecular biology (12.06.2013)
Published in Journal of molecular biology (12.06.2013)
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The proto-chromatosome: A fundamental subunit of chromatin?
Ocampo, Josefina, Cui, Feng, Zhurkin, Victor B., Clark, David J.
Published in Nucleus (Austin, Tex.) (03.07.2016)
Published in Nucleus (Austin, Tex.) (03.07.2016)
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Journal Article
p53 Binding to Nucleosomal DNA Depends on the Rotational Positioning of DNA Response Element
Sahu, Geetaram, Wang, Difei, Chen, Claudia B., Zhurkin, Victor B., Harrington, Rodney E., Appella, Ettore, Hager, Gordon L., Nagaich, Akhilesh K.
Published in The Journal of biological chemistry (08.01.2010)
Published in The Journal of biological chemistry (08.01.2010)
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Journal Article
DNA–RNA interactions are critical for chromosome condensation in Escherichia coli
Qian, Zhong, Zhurkin, Victor B., Adhya, Sankar
Published in Proceedings of the National Academy of Sciences - PNAS (14.11.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (14.11.2017)
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Journal Article
Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions
Shaytan, Alexey K., Armeev, Grigoriy A., Goncearenco, Alexander, Zhurkin, Victor B., Landsman, David, Panchenko, Anna R.
Published in Journal of molecular biology (16.01.2016)
Published in Journal of molecular biology (16.01.2016)
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Journal Article
nuMap: A Web Platform for Accurate Prediction of Nucleosome Positioning
Alharbi, Bader A., Alshammari, Thamir H., Felton, Nathan L., Zhurkin, Victor B., Cui, Feng
Published in Genomics, proteomics & bioinformatics (01.10.2014)
Published in Genomics, proteomics & bioinformatics (01.10.2014)
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Journal Article
The p53 tumor suppressor network is a key responder to microenvironmental components of chronic inflammatory stress
STAIB, Frank, ROBLES, Ana I, GALLE, Peter R, HARRIS, Curtis C, VARTICOVSKI, Lyuba, WANG, Xin W, ZEEBERG, Barry R, SIROTIN, Michail, ZHURKIN, Victor B, HOFSETH, Lorne J, HUSSAIN, S. Perwez, WEINSTEIN, John N
Published in Cancer research (Chicago, Ill.) (15.11.2005)
Published in Cancer research (Chicago, Ill.) (15.11.2005)
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Protein–DNA Hydrophobic Recognition in the Minor Groove is Facilitated by Sugar Switching
Tolstorukov, Michael Y., Jernigan, Robert L., Zhurkin, Victor B.
Published in Journal of molecular biology (12.03.2004)
Published in Journal of molecular biology (12.03.2004)
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