TCGA-assembler 2: software pipeline for retrieval and processing of TCGA/CPTAC data
Wei, Lin, Jin, Zhilin, Yang, Shengjie, Xu, Yanxun, Zhu, Yitan, Ji, Yuan
Published in Bioinformatics (01.05.2018)
Published in Bioinformatics (01.05.2018)
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Converting tabular data into images for deep learning with convolutional neural networks
Zhu, Yitan, Brettin, Thomas, Xia, Fangfang, Partin, Alexander, Shukla, Maulik, Yoo, Hyunseung, Evrard, Yvonne A, Doroshow, James H, Stevens, Rick L
Published in Scientific reports (31.05.2021)
Published in Scientific reports (31.05.2021)
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MR Imaging Radiomics Signatures for Predicting the Risk of Breast Cancer Recurrence as Given by Research Versions of MammaPrint, Oncotype DX, and PAM50 Gene Assays
Li, Hui, Zhu, Yitan, Burnside, Elizabeth S, Drukker, Karen, Hoadley, Katherine A, Fan, Cheng, Conzen, Suzanne D, Whitman, Gary J, Sutton, Elizabeth J, Net, Jose M, Ganott, Marie, Huang, Erich, Morris, Elizabeth A, Perou, Charles M, Ji, Yuan, Giger, Maryellen L
Published in Radiology (01.11.2016)
Published in Radiology (01.11.2016)
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A Chaperome Subnetwork Safeguards Proteostasis in Aging and Neurodegenerative Disease
Brehme, Marc, Voisine, Cindy, Rolland, Thomas, Wachi, Shinichiro, Soper, James H., Zhu, Yitan, Orton, Kai, Villella, Adriana, Garza, Dan, Vidal, Marc, Ge, Hui, Morimoto, Richard I.
Published in Cell reports (Cambridge) (06.11.2014)
Published in Cell reports (Cambridge) (06.11.2014)
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Deciphering Genomic Underpinnings of Quantitative MRI-based Radiomic Phenotypes of Invasive Breast Carcinoma
Zhu, Yitan, Li, Hui, Guo, Wentian, Drukker, Karen, Lan, Li, Giger, Maryellen L, Ji, Yuan
Published in Scientific reports (07.12.2015)
Published in Scientific reports (07.12.2015)
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Publisher Correction: Converting tabular data into images for deep learning with convolutional neural networks
Zhu, Yitan, Brettin, Thomas, Xia, Fangfang, Partin, Alexander, Shukla, Maulik, Yoo, Hyunseung, Evrard, Yvonne A., Doroshow, James H., Stevens, Rick L.
Published in Scientific reports (01.07.2021)
Published in Scientific reports (01.07.2021)
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Journal Article
Learning curves for drug response prediction in cancer cell lines
Partin, Alexander, Brettin, Thomas, Evrard, Yvonne A, Zhu, Yitan, Yoo, Hyunseung, Xia, Fangfang, Jiang, Songhao, Clyde, Austin, Shukla, Maulik, Fonstein, Michael, Doroshow, James H, Stevens, Rick L
Published in BMC bioinformatics (17.05.2021)
Published in BMC bioinformatics (17.05.2021)
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Quantitative MRI radiomics in the prediction of molecular classifications of breast cancer subtypes in the TCGA/TCIA data set
Li, Hui, Zhu, Yitan, Burnside, Elizabeth S, Huang, Erich, Drukker, Karen, Hoadley, Katherine A, Fan, Cheng, Conzen, Suzanne D, Zuley, Margarita, Net, Jose M, Sutton, Elizabeth, Whitman, Gary J, Morris, Elizabeth, Perou, Charles M, Ji, Yuan, Giger, Maryellen L
Published in NPJ breast cancer (11.05.2016)
Published in NPJ breast cancer (11.05.2016)
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Radiogenomics of breast cancer using dynamic contrast enhanced MRI and gene expression profiling
Yeh, Albert C, Li, Hui, Zhu, Yitan, Zhang, Jing, Khramtsova, Galina, Drukker, Karen, Edwards, Alexandra, McGregor, Stephanie, Yoshimatsu, Toshio, Zheng, Yonglan, Niu, Qun, Abe, Hiroyuki, Mueller, Jeffrey, Conzen, Suzanne, Ji, Yuan, Giger, Maryellen L, Olopade, Olufunmilayo I
Published in Cancer imaging (15.07.2019)
Published in Cancer imaging (15.07.2019)
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Prediction of clinical phenotypes in invasive breast carcinomas from the integration of radiomics and genomics data
Guo, Wentian, Li, Hui, Zhu, Yitan, Lan, Li, Yang, Shengjie, Drukker, Karen, Morris, Elizabeth, Burnside, Elizabeth, Whitman, Gary, Giger, Maryellen L, Ji, Yuan, TCGA Breast Phenotype Research Group
Published in Journal of medical imaging (Bellingham, Wash.) (01.10.2015)
Published in Journal of medical imaging (Bellingham, Wash.) (01.10.2015)
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Journal Article
Integration of Computational Docking into Anti-Cancer Drug Response Prediction Models
Narykov, Oleksandr, Zhu, Yitan, Brettin, Thomas, Evrard, Yvonne A, Partin, Alexander, Shukla, Maulik, Xia, Fangfang, Clyde, Austin, Vasanthakumari, Priyanka, Doroshow, James H, Stevens, Rick L
Published in Cancers (21.12.2023)
Published in Cancers (21.12.2023)
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A Comprehensive Investigation of Active Learning Strategies for Conducting Anti-Cancer Drug Screening
Vasanthakumari, Priyanka, Zhu, Yitan, Brettin, Thomas, Partin, Alexander, Shukla, Maulik, Xia, Fangfang, Narykov, Oleksandr, Weil, Michael Ryan, Stevens, Rick L
Published in Cancers (01.01.2024)
Published in Cancers (01.01.2024)
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Enhanced Co-Expression Extrapolation (COXEN) Gene Selection Method for Building Anti-Cancer Drug Response Prediction Models
Zhu, Yitan, Brettin, Thomas, Evrard, Yvonne A, Xia, Fangfang, Partin, Alexander, Shukla, Maulik, Yoo, Hyunseung, Doroshow, James H, Stevens, Rick L
Published in Genes (11.09.2020)
Published in Genes (11.09.2020)
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Journal Article
Zodiac: A Comprehensive Depiction of Genetic Interactions in Cancer by Integrating TCGA Data
Zhu, Yitan, Xu, Yanxun, Helseth, Jr, Donald L, Gulukota, Kamalakar, Yang, Shengjie, Pesce, Lorenzo L, Mitra, Riten, Müller, Peter, Sengupta, Subhajit, Guo, Wentian, Silverstein, Jonathan C, Foster, Ian, Parsad, Nigel, White, Kevin P, Ji, Yuan
Published in JNCI : Journal of the National Cancer Institute (01.08.2015)
Published in JNCI : Journal of the National Cancer Institute (01.08.2015)
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Journal Article
Nuclear envelope dystrophies show a transcriptional fingerprint suggesting disruption of Rb–MyoD pathways in muscle regeneration
Bakay, Marina, Wang, Zuyi, Melcon, Gisela, Schiltz, Louis, Xuan, Jianhua, Zhao, Po, Sartorelli, Vittorio, Seo, Jinwook, Pegoraro, Elena, Angelini, Corrado, Shneiderman, Ben, Escolar, Diana, Chen, Yi-Wen, Winokur, Sara T., Pachman, Lauren M., Fan, Chenguang, Mandler, Raul, Nevo, Yoram, Gordon, Erynn, Zhu, Yitan, Dong, Yibin, Wang, Yue, Hoffman, Eric P.
Published in Brain (London, England : 1878) (01.04.2006)
Published in Brain (London, England : 1878) (01.04.2006)
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Initialization enhancer for non-negative matrix factorization
Zheng, Zhonglong, Yang, Jie, Zhu, Yitan
Published in Engineering applications of artificial intelligence (01.02.2007)
Published in Engineering applications of artificial intelligence (01.02.2007)
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Data augmentation and multimodal learning for predicting drug response in patient-derived xenografts from gene expressions and histology images
Partin, Alexander, Brettin, Thomas, Zhu, Yitan, Dolezal, James M, Kochanny, Sara, Pearson, Alexander T, Shukla, Maulik, Evrard, Yvonne A, Doroshow, James H, Stevens, Rick L
Published in Frontiers in medicine (07.03.2023)
Published in Frontiers in medicine (07.03.2023)
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