Integrating unsupervised language model with triplet neural networks for protein gene ontology prediction
Zhu, Yi-Heng, Zhang, Chengxin, Yu, Dong-Jun, Zhang, Yang
Published in PLoS computational biology (01.12.2022)
Published in PLoS computational biology (01.12.2022)
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Journal Article
Integrating unsupervised language model with multi-view multiple sequence alignments for high-accuracy inter-chain contact prediction
Liu, Zi, Zhu, Yi-Heng, Shen, Long-Chen, Xiao, Xuan, Qiu, Wang-Ren, Yu, Dong-Jun
Published in Computers in biology and medicine (01.11.2023)
Published in Computers in biology and medicine (01.11.2023)
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Journal Article
TargetMM: Accurate Missense Mutation Prediction by Utilizing Local and Global Sequence Information with Classifier Ensemble
Ge, Fang, Hu, Jun, Zhu, Yi-Heng, Arif, Muhammad, Yu, Dong-Jun
Published in Combinatorial chemistry & high throughput screening (01.01.2022)
Published in Combinatorial chemistry & high throughput screening (01.01.2022)
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Journal Article
MutTMPredictor: Robust and accurate cascade XGBoost classifier for prediction of mutations in transmembrane proteins
Ge, Fang, Zhu, Yi-Heng, Xu, Jian, Muhammad, Arif, Song, Jiangning, Yu, Dong-Jun
Published in Computational and structural biotechnology journal (01.01.2021)
Published in Computational and structural biotechnology journal (01.01.2021)
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Journal Article
TripletGO: Integrating Transcript Expression Profiles with Protein Homology Inferences for Gene Function Prediction
Zhu, Yi-Heng, Zhang, Chengxin, Liu, Yan, Omenn, Gilbert S., Freddolino, Peter L., Yu, Dong-Jun, Zhang, Yang
Published in Genomics, proteomics & bioinformatics (01.10.2022)
Published in Genomics, proteomics & bioinformatics (01.10.2022)
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Journal Article
Improving protein fold recognition using triplet network and ensemble deep learning
Liu, Yan, Han, Ke, Zhu, Yi-Heng, Zhang, Ying, Shen, Long-Chen, Song, Jiangning, Yu, Dong-Jun
Published in Briefings in bioinformatics (05.11.2021)
Published in Briefings in bioinformatics (05.11.2021)
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Journal Article
SSCpred: Single-Sequence-Based Protein Contact Prediction Using Deep Fully Convolutional Network
Chen, Ming-Cai, Li, Yang, Zhu, Yi-Heng, Ge, Fang, Yu, Dong-Jun
Published in Journal of chemical information and modeling (22.06.2020)
Published in Journal of chemical information and modeling (22.06.2020)
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Journal Article
DeepTF: Accurate Prediction of Transcription Factor Binding Sites by Combining Multi-scale Convolution and Long Short-Term Memory Neural Network
Bao, Xiao-Rong, Zhu, Yi-Heng, Yu, Dong-Jun
Published in Intelligence Science and Big Data Engineering. Big Data and Machine Learning (2019)
Published in Intelligence Science and Big Data Engineering. Big Data and Machine Learning (2019)
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Book Chapter
Experimental study of the effect of the ventilation mode on the water-exit of the vehicle
Published in Physics of fluids (1994)
(01.08.2024)
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Journal Article
BLAM6A-Merge: Leveraging Attention Mechanisms and Feature Fusion Strategies to Improve the Identification of RNA N6-methyladenosine Sites
Xia, Yunpeng, Zhang, Ying, Liu, Dian, Zhu, Yi-Heng, Wang, Zhikang, Song, Jiangning, Yu, Dong-Jun
Published in IEEE/ACM transactions on computational biology and bioinformatics (24.06.2024)
Published in IEEE/ACM transactions on computational biology and bioinformatics (24.06.2024)
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Journal Article
Charged residues render pro-OmpA potential dependent for initiation of membrane translocation
GELLER, B, HENG-YI ZHU, SHIYUAN CHENG, KUHN, A, DALBEY, R. E
Published in The Journal of biological chemistry (05.05.1993)
Published in The Journal of biological chemistry (05.05.1993)
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Journal Article