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Host Genetics and Gut Microbiome: Challenges and Perspectives
Kurilshikov, Alexander, Wijmenga, Cisca, Fu, Jingyuan, Zhernakova, Alexandra
Published in Trends in immunology (01.09.2017)
Published in Trends in immunology (01.09.2017)
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The MHC locus and genetic susceptibility to autoimmune and infectious diseases
Matzaraki, Vasiliki, Kumar, Vinod, Wijmenga, Cisca, Zhernakova, Alexandra
Published in Genome Biology (27.04.2017)
Published in Genome Biology (27.04.2017)
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Impact of commonly used drugs on the composition and metabolic function of the gut microbiota
Vich Vila, Arnau, Collij, Valerie, Sanna, Serena, Sinha, Trishla, Imhann, Floris, Bourgonje, Arno R., Mujagic, Zlatan, Jonkers, Daisy M. A. E., Masclee, Ad A. M., Fu, Jingyuan, Kurilshikov, Alexander, Wijmenga, Cisca, Zhernakova, Alexandra, Weersma, Rinse K.
Published in Nature communications (17.01.2020)
Published in Nature communications (17.01.2020)
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Challenges and future directions for studying effects of host genetics on the gut microbiome
Sanna, Serena, Kurilshikov, Alexander, van der Graaf, Adriaan, Fu, Jingyuan, Zhernakova, Alexandra
Published in Nature genetics (01.02.2022)
Published in Nature genetics (01.02.2022)
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The neuroactive potential of the human gut microbiota in quality of life and depression
Valles-Colomer, Mireia, Falony, Gwen, Darzi, Youssef, Tigchelaar, Ettje F., Wang, Jun, Tito, Raul Y., Schiweck, Carmen, Kurilshikov, Alexander, Joossens, Marie, Wijmenga, Cisca, Claes, Stephan, Van Oudenhove, Lukas, Zhernakova, Alexandra, Vieira-Silva, Sara, Raes, Jeroen
Published in Nature microbiology (01.04.2019)
Published in Nature microbiology (01.04.2019)
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The long-term genetic stability and individual specificity of the human gut microbiome
Chen, Lianmin, Wang, Daoming, Garmaeva, Sanzhima, Kurilshikov, Alexander, Vich Vila, Arnau, Gacesa, Ranko, Sinha, Trishla, Segal, Eran, Weersma, Rinse K., Wijmenga, Cisca, Zhernakova, Alexandra, Fu, Jingyuan
Published in Cell (29.04.2021)
Published in Cell (29.04.2021)
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Negativeome characterization and decontamination in early-life virome studies
Kuzub, Nataliia, Kurilshikov, Alexander, Zhernakova, Alexandra, Garmaeva, Sanzhima
Published in Nature communications (04.07.2025)
Published in Nature communications (04.07.2025)
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Studying the gut virome in the metagenomic era: challenges and perspectives
Garmaeva, Sanzhima, Sinha, Trishla, Kurilshikov, Alexander, Fu, Jingyuan, Wijmenga, Cisca, Zhernakova, Alexandra
Published in BMC biology (28.10.2019)
Published in BMC biology (28.10.2019)
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Relationship between gut microbiota and circulating metabolites in population-based cohorts
Vojinovic, Dina, Radjabzadeh, Djawad, Kurilshikov, Alexander, Amin, Najaf, Wijmenga, Cisca, Franke, Lude, Ikram, M. Arfan, Uitterlinden, Andre G., Zhernakova, Alexandra, Fu, Jingyuan, Kraaij, Robert, van Duijn, Cornelia M.
Published in Nature communications (20.12.2019)
Published in Nature communications (20.12.2019)
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Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project
Lopera-Maya, Esteban A., Kurilshikov, Alexander, van der Graaf, Adriaan, Hu, Shixian, Andreu-Sánchez, Sergio, Chen, Lianmin, Vila, Arnau Vich, Gacesa, Ranko, Sinha, Trishla, Collij, Valerie, Klaassen, Marjiolein A. Y., Bolte, Laura A., Gois, Milla F. Brandao, Neerincx, Pieter B. T., Swertz, Morris A., Harmsen, Hermie J. M., Wijmenga, Cisca, Fu, Jingyuan, Weersma, Rinse K., Zhernakova, Alexandra, Sanna, Serena
Published in Nature genetics (01.02.2022)
Published in Nature genetics (01.02.2022)
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Causal relationships among the gut microbiome, short-chain fatty acids and metabolic diseases
Sanna, Serena, van Zuydam, Natalie R., Mahajan, Anubha, Kurilshikov, Alexander, Vich Vila, Arnau, Võsa, Urmo, Mujagic, Zlatan, Masclee, Ad A. M., Jonkers, Daisy M. A. E., Oosting, Marije, Joosten, Leo A. B., Netea, Mihai G., Franke, Lude, Zhernakova, Alexandra, Fu, Jingyuan, Wijmenga, Cisca, McCarthy, Mark I.
Published in Nature genetics (01.04.2019)
Published in Nature genetics (01.04.2019)
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Influence of the microbiome, diet and genetics on inter-individual variation in the human plasma metabolome
Chen, Lianmin, Zhernakova, Daria V., Kurilshikov, Alexander, Andreu-Sánchez, Sergio, Wang, Daoming, Augustijn, Hannah E., Vich Vila, Arnau, Weersma, Rinse K., Medema, Marnix H., Netea, Mihai G., Kuipers, Folkert, Wijmenga, Cisca, Zhernakova, Alexandra, Fu, Jingyuan
Published in Nature medicine (01.11.2022)
Published in Nature medicine (01.11.2022)
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Clinical implications of shared genetics and pathogenesis in autoimmune diseases
Zhernakova, Alexandra, Withoff, Sebo, Wijmenga, Cisca
Published in Nature reviews. Endocrinology (01.11.2013)
Published in Nature reviews. Endocrinology (01.11.2013)
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Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity
Schirmer, Melanie, Smeekens, Sanne P., Vlamakis, Hera, Jaeger, Martin, Oosting, Marije, Franzosa, Eric A., ter Horst, Rob, Jansen, Trees, Jacobs, Liesbeth, Bonder, Marc Jan, Kurilshikov, Alexander, Fu, Jingyuan, Joosten, Leo A.B., Zhernakova, Alexandra, Huttenhower, Curtis, Wijmenga, Cisca, Netea, Mihai G., Xavier, Ramnik J.
Published in Cell (03.11.2016)
Published in Cell (03.11.2016)
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Gut microbial co-abundance networks show specificity in inflammatory bowel disease and obesity
Chen, Lianmin, Collij, Valerie, Jaeger, Martin, van den Munckhof, Inge C. L., Vich Vila, Arnau, Kurilshikov, Alexander, Gacesa, Ranko, Sinha, Trishla, Oosting, Marije, Joosten, Leo A. B., Rutten, Joost H. W., Riksen, Niels P., Xavier, Ramnik J., Kuipers, Folkert, Wijmenga, Cisca, Zhernakova, Alexandra, Netea, Mihai G., Weersma, Rinse K., Fu, Jingyuan
Published in Nature communications (11.08.2020)
Published in Nature communications (11.08.2020)
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Population-level analysis of gut microbiome variation
Falony, Gwen, Joossens, Marie, Vieira-Silva, Sara, Wang, Jun, Darzi, Youssef, Faust, Karoline, Kurilshikov, Alexander, Bonder, Marc Jan, Valles-Colomer, Mireia, Vandeputte, Doris, Tito, Raul Y., Chaffron, Samuel, Rymenans, Leen, Verspecht, Chloë, De Sutter, Lise, Lima-Mendez, Gipsi, D'hoe, Kevin, Jonckheere, Karl, Homola, Daniel, Garcia, Roberto, Tigchelaar, Ettje F., Eeckhaudt, Linda, Fu, Jingyuan, Henckaerts, Liesbet, Zhernakova, Alexandra, Wijmenga, Cisca, Raes, Jeroen
Published in Science (American Association for the Advancement of Science) (29.04.2016)
Published in Science (American Association for the Advancement of Science) (29.04.2016)
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Interplay of host genetics and gut microbiota underlying the onset and clinical presentation of inflammatory bowel disease
Imhann, Floris, Vich Vila, Arnau, Bonder, Marc Jan, Fu, Jingyuan, Gevers, Dirk, Visschedijk, Marijn C, Spekhorst, Lieke M, Alberts, Rudi, Franke, Lude, van Dullemen, Hendrik M, Ter Steege, Rinze W F, Huttenhower, Curtis, Dijkstra, Gerard, Xavier, Ramnik J, Festen, Eleonora A M, Wijmenga, Cisca, Zhernakova, Alexandra, Weersma, Rinse K
Published in Gut (01.01.2018)
Published in Gut (01.01.2018)
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Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity
Zhernakova, Alexandra, Kurilshikov, Alexander, Bonder, Marc Jan, Tigchelaar, Ettje F., Schirmer, Melanie, Vatanen, Tommi, Mujagic, Zlatan, Vila, Arnau Vich, Falony, Gwen, Vieira-Silva, Sara, Wang, Jun, Imhann, Floris, Brandsma, Eelke, Jankipersadsing, Soesma A., Joossens, Marie, Cenit, Maria Carmen, Deelen, Patrick, Swertz, Morris A., study, LifeLines cohort, Weersma, Rinse K., Feskens, Edith J. M., Netea, Mihai G., Gevers, Dirk, Jonkers, Daisy, Franke, Lude, Aulchenko, Yurii S., Huttenhower, Curtis, Raes, Jeroen, Hofker, Marten H., Xavier, Ramnik J., Wijmenga, Cisca, Fu, Jingyuan
Published in Science (American Association for the Advancement of Science) (29.04.2016)
Published in Science (American Association for the Advancement of Science) (29.04.2016)
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