Replication timing maintains the global epigenetic state in human cells
Klein, Kyle N, Zhao, Peiyao A, Lyu, Xiaowen, Sasaki, Takayo, Bartlett, Daniel A, Singh, Amar M, Tasan, Ipek, Zhang, Meng, Watts, Lotte P, Hiraga, Shin-Ichiro, Natsume, Toyoaki, Zhou, Xuemeng, Baslan, Timour, Leung, Danny, Kanemaki, Masato T, Donaldson, Anne D, Zhao, Huimin, Dalton, Stephen, Corces, Victor G, Gilbert, David M
Published in Science (American Association for the Advancement of Science) (23.04.2021)
Published in Science (American Association for the Advancement of Science) (23.04.2021)
Get full text
Journal Article
Local rewiring of genome–nuclear lamina interactions by transcription
Brueckner, Laura, Zhao, Peiyao A, van Schaik, Tom, Leemans, Christ, Sima, Jiao, Peric‐Hupkes, Daniel, Gilbert, David M, van Steensel, Bas
Published in The EMBO journal (16.03.2020)
Published in The EMBO journal (16.03.2020)
Get full text
Journal Article
Cohesin-mediated loop anchors confine the locations of human replication origins
Emerson, Daniel J., Zhao, Peiyao A., Cook, Ashley L., Barnett, R. Jordan, Klein, Kyle N., Saulebekova, Dalila, Ge, Chunmin, Zhou, Linda, Simandi, Zoltan, Minsk, Miriam K., Titus, Katelyn R., Wang, Weitao, Gong, Wanfeng, Zhang, Di, Yang, Liyan, Venev, Sergey V., Gibcus, Johan H., Yang, Hongbo, Sasaki, Takayo, Kanemaki, Masato T., Yue, Feng, Dekker, Job, Chen, Chun-Long, Gilbert, David M., Phillips-Cremins, Jennifer E.
Published in Nature (London) (23.06.2022)
Published in Nature (London) (23.06.2022)
Get full text
Journal Article
Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance between Replication Timing and Chromatin Compartment
Dileep, Vishnu, Wilson, Korey A., Marchal, Claire, Lyu, Xiaowen, Zhao, Peiyao A., Li, Ben, Poulet, Axel, Bartlett, Daniel A., Rivera-Mulia, Juan Carlos, Qin, Zhaohui S., Robins, Allan J., Schulz, Thomas C., Kulik, Michael J., McCord, Rachel Patton, Dekker, Job, Dalton, Stephen, Corces, Victor G., Gilbert, David M.
Published in Stem cell reports (09.07.2019)
Published in Stem cell reports (09.07.2019)
Get full text
Journal Article
Polarised maintenance of cytoophidia in Drosophila follicle epithelia
Wang, Qiao-Qi, Zhao, Peiyao A., Tastan, Ömür Y., Liu, Ji-Long
Published in Experimental cell research (15.05.2021)
Published in Experimental cell research (15.05.2021)
Get full text
Journal Article
Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication
Sima, Jiao, Chakraborty, Abhijit, Dileep, Vishnu, Michalski, Marco, Klein, Kyle N., Holcomb, Nicolas P., Turner, Jesse L., Paulsen, Michelle T., Rivera-Mulia, Juan Carlos, Trevilla-Garcia, Claudia, Bartlett, Daniel A., Zhao, Peiyao A., Washburn, Brian K., Nora, Elphège P., Kraft, Katerina, Mundlos, Stefan, Bruneau, Benoit G., Ljungman, Mats, Fraser, Peter, Ay, Ferhat, Gilbert, David M.
Published in Cell (07.02.2019)
Published in Cell (07.02.2019)
Get full text
Journal Article
Statistical Comparisons Of Chromosomal Shape Populations
Soto, Carlos J., Zhao, Peiyao A., Klein, Kyle N., Gilbert, David M., Srivastava, Anuj
Published in 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI) (01.04.2021)
Published in 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI) (01.04.2021)
Get full text
Conference Proceeding
Journal Article
Beyond A and B Compartments: how major nuclear locales define nuclear genome organization and function
Gholamalamdari, Omid, van Schaik, Tom, Wang, Yuchuan, Kumar, Pradeep, Zhang, Liguo, Zhang, Yang, Gonzalez, Gabriela A Hernandez, Vouzas, Athanasios E, Zhao, Peiyao A, Gilbert, David M, Ma, Jian, van Steensel, Bas, Belmont, Andrew S
Published in bioRxiv (17.07.2024)
Published in bioRxiv (17.07.2024)
Get full text
Journal Article
Identifying cis elements for spatio-temporal control of mammalian DNA replication
Sima, Jiao, Chakraborty, Abhijit, Dileep, Vishnu, Michalski, Marco, Klein, Kyle N., Holcomb, Nicolas P., Turner, Jesse L., Paulsen, Michelle T., Rivera-Mulia, Juan Carlos, Trevilla-Garcia, Claudia, Bartlett, Daniel A., Zhao, Peiyao A., Washburn, Brian K., Nora, Elphège P., Kraft, Katerina, Mundlos, Stefan, Bruneau, Benoit G., Ljungman, Mats, Fraser, Peter, Ay, Ferhat, Gilbert, David M.
Published in Cell (27.12.2018)
Published in Cell (27.12.2018)
Get full text
Journal Article
Abstract 5331: Spatial resolution of immune cell lineages in the tumor microenvironment of plasma cell dyscrasias
Dillon, Medbh A., Arvidson, Lisa, Phalen, Cole G., Ishibashi, Julian R., Johanneson, John B., Thomson, Zachary J., Zhao, Peiyao A., Malone, Jocelin, Kopp, Mackenzie S., Norton, Matthew, Spang, Gabriella, Ludmann, Susan A., Savage, Adam K., Gustafson, Claire E., Glass, Marla, Kuan, Emma L., Peng, Tao, Graybuck, Lucas T., Li, Xiao-jun, Torgerson, Troy R., Skene, Peter J., Goldrath, Ananda W., Jensen, Samuel, Anover-Sombke, Stephanie, Angus-Hill, Melinda L.
Published in Cancer research (Chicago, Ill.) (22.03.2024)
Published in Cancer research (Chicago, Ill.) (22.03.2024)
Get full text
Journal Article
Cohesin-mediated loop anchors confine the location of human replication origins
Emerson, Daniel, Zhao, Peiyao A, Klein, Kyle, Ge, Chunmin, Zhou, Linda, Sasaki, Takayo, Yang, Liyan, Venvev, Sergey V, Gibcus, Johan H, Dekker, Job, Gilbert, David M, Phillips-Cremins, Jennifer E
Published in bioRxiv (06.01.2021)
Published in bioRxiv (06.01.2021)
Get full text
Paper
Replication timing maintains the global epigenetic state in human cells
Klein, Kyle N, Zhao, Peiyao A, Lyu, Xiaowen, Bartlett, Daniel A, Singh, Amar, Tasan, Ipek, Watts, Lotte P, Shin-Ichiro Hiraga, Natsume, Toyoaki, Zhou, Xuemeng, Leung, Danny, Kanemaki, Masato, Donaldson, Anne D, Zhao, Huimin, Dalton, Stephen, Corces, Victor, Gilbert, David M
Published in bioRxiv (28.12.2019)
Published in bioRxiv (28.12.2019)
Get full text
Paper