Genetic diversity and structure of the critically endangered Artocarpus annulatus, a crop wild relative of jackfruit ( A. heterophyllus )
Dickinson, Leta, Noble, Hilary, Gardner, Elliot, Puad, Aida Shafreena Ahmad, Zakaria, Wan Nuur Fatiha Wan, Zerega, Nyree J.C
Published in PeerJ (San Francisco, CA) (21.09.2020)
Published in PeerJ (San Francisco, CA) (21.09.2020)
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Journal Article
HybPiper: Extracting Coding Sequence and Introns for Phylogenetics from High-Throughput Sequencing Reads Using Target Enrichment
Johnson, Matthew G, Gardner, Elliot M, Liu, Yang, Medina, Rafael, Goffinet, Bernard, Shaw, A. Jonathan, Zerega, Nyree J. C, Wickett, Norman J
Published in Applications in plant sciences (01.07.2016)
Published in Applications in plant sciences (01.07.2016)
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Journal Article
Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus
Kates, Heather Rose, Johnson, Matthew G., Gardner, Elliot M., Zerega, Nyree J. C., Wickett, Norman J.
Published in American journal of botany (01.03.2018)
Published in American journal of botany (01.03.2018)
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Journal Article
Paralogs and off-target sequences improve phylogenetic resolution in a densely-sampled study of the breadfruit genus (Artocarpus, Moraceae)
Gardner, Elliot M, Johnson, Matthew G, Pereira, Joan T, Puad, Aida Shafreena Ahmad, Arifiani, Deby, Wickett, Norman J, Zerega, Nyree J C
Published in Systematic biology (24.09.2020)
Published in Systematic biology (24.09.2020)
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Journal Article
Engagement with indigenous people preserves local knowledge and biodiversity alike
Gardner, Elliot M., Ahmad Puad, Aida Shafreena, Pereira, Joan T., Tagi, Jugah anak, Nyegang, Salang anak, Miun, Postar, Jumian, Jeisin, Pokorny, Lisa, Zerega, Nyree J.C.
Published in Current biology (06.06.2022)
Published in Current biology (06.06.2022)
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Journal Article
Linking breadfruit cultivar names across the globe connects histories after 230 years of separation
Audi, Lauren, Shallow, Gordon, Robertson, Erasto, Bobo, Dean, Ragone, Diane, Gardner, Elliot M., Jhurree-Dussoruth, Babita, Wajer, Jacek, Zerega, Nyree J.C.
Published in Current biology (23.01.2023)
Published in Current biology (23.01.2023)
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Journal Article
Echoes of ancient introgression punctuate stable genomic lineages in the evolution of figs
Gardner, Elliot M, Bruun-Lund, Sam, Niissalo, Matti, Chantarasuwan, Bhanumas, Clement, Wendy L, Geri, Connie, Harrison, Rhett D, Hipp, Andrew L, Holvoet, Maxime, Khew, Gillian, Kjellberg, Finn, Liao, Shuai, Pederneiras, Leandro Cardoso, Peng, Yan-Qiong, Pereira, Joan T, Phillipps, Quentin, Ahmad Puad, Aida Shafreena, Rasplus, Jean-Yves, Sang, Julia, Schou, Sverre Juul, Velautham, Elango, Weiblen, George D, Zerega, Nyree J C, Zhang, Qian, Zhang, Zhen, Baraloto, Christopher, Rønsted, Nina
Published in Proceedings of the National Academy of Sciences - PNAS (11.07.2023)
Published in Proceedings of the National Academy of Sciences - PNAS (11.07.2023)
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Journal Article
Genetic Diversity of Bangladeshi Jackfruit (Artocarpus heterophyllus) over Time and Across Seedling Sources
Witherup, Colby, Zuberi, M. Iqbal, Hossain, Salma, Zerega, Nyree J. C.
Published in Economic botany (15.06.2019)
Published in Economic botany (15.06.2019)
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Journal Article
A transcriptome screen for positive selection in domesticated breadfruit and its wild relatives (Artocarpus spp.)
Laricchia, Kristen M., Johnson, Matthew G., Ragone, Diane, Williams, Evelyn W., Zerega, Nyree J. C., Wickett, Norman J.
Published in American journal of botany (01.05.2018)
Published in American journal of botany (01.05.2018)
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Journal Article
A FLOWER IN FRUIT’S CLOTHING: POLLINATION OF JACKFRUIT (ARTOCARPUS HETEROPHYLLUS, MORACEAE) BY A NEW SPECIES OF GALL MIDGE, CLINODIPLOSIS ULTRACREPIDATA SP. NOV. (DIPTERA: CECIDOMYIIDAE)
Gardner, Elliot M., Gagné, Raymond J., Kendra, Paul E., Montgomery, Wayne S., Raguso, Robert A., McNeil, Tashina T., Zerega, Nyree J. C.
Published in International journal of plant sciences (01.06.2018)
Published in International journal of plant sciences (01.06.2018)
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Journal Article
Origin and diversity of an underutilized fruit tree crop, cempedak (Artocarpus integer, Moraceae)
Wang, Maria M. H., Gardner, Elliot M., Chung, Richard C. K., Chew, Ming Yee, Milan, Abd Rahman, Pereira, Joan T., Zerega, Nyree J. C.
Published in American journal of botany (01.05.2018)
Published in American journal of botany (01.05.2018)
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Journal Article
Rapid improvement in soil health following the conversion of abandoned farm fields to annual or perennial agroecosystems
Chamberlain, Lucas A., Aguayo, Teresa, Zerega, Nyree J. C., Dybzinski, Ray, Egerton-Warburton, Louise M.
Published in Frontiers in sustainable food systems (21.10.2022)
Published in Frontiers in sustainable food systems (21.10.2022)
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Journal Article
Biogeography and divergence times in the mulberry family (Moraceae)
Zerega, Nyree J.C., Clement, Wendy L., Datwyler, Shannon L., Weiblen, George D.
Published in Molecular phylogenetics and evolution (01.11.2005)
Published in Molecular phylogenetics and evolution (01.11.2005)
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Journal Article
Draft Genomes of Two Artocarpus Plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis)
Sahu, Sunil Kumar, Liu, Min, Yssel, Anna, Kariba, Robert, Muthemba, Samuel, Jiang, Sanjie, Song, Bo, Hendre, Prasad S, Muchugi, Alice, Jamnadass, Ramni, Kao, Shu-Min, Featherston, Jonathan, Zerega, Nyree J C, Xu, Xun, Yang, Huanming, Deynze, Allen Van, Peer, Yves Van de, Liu, Xin, Liu, Huan
Published in Genes (24.12.2019)
Published in Genes (24.12.2019)
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Journal Article
Travel Tales of a Worldwide Weed: Genomic Signatures of Plantago major L. Reveal Distinct Genotypic Groups With Links to Colonial Trade Routes
Iwanycki Ahlstrand, Natalie, Gopalakrishnan, Shyam, Vieira, Filipe G., Bieker, Vanessa C., Meudt, Heidi M., Dunbar-Co, Stephanie, Rothfels, Carl J., Martinez-Swatson, Karen A., Maldonado, Carla, Hassemer, Gustavo, Shipunov, Alexey, Bowers, M. Deane, Gardner, Elliot, Xu, Maonian, Ghorbani, Abdolbaset, Amano, Makoto, Grace, Olwen M., Pringle, James S., Bishop, Madonna, Manzanilla, Vincent, Cotrim, Helena, Blaney, Sean, Zubov, Dimitri, Choi, Hong-Keun, Yesil, Yeter, Bennett, Bruce, Vimolmangkang, Sornkanok, El-Seedi, Hesham R., Staub, Peter O., Li, Zhu, Boldbaatar, Delgerbat, Hislop, Michael, Caddy, Laura J., Muasya, A. Muthama, Saslis-Lagoudakis, C. Haris, Gilbert, M. Thomas P., Zerega, Nyree J. C., Rønsted, Nina
Published in Frontiers in plant science (09.06.2022)
Published in Frontiers in plant science (09.06.2022)
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Journal Article
Low-Coverage, Whole-Genome Sequencing of Artocarpus camansi (Moraceae) for Phylogenetic Marker Development and Gene Discovery
Gardner, Elliot M, Johnson, Matthew G, Ragone, Diane, Wickett, Norman J, Zerega, Nyree J. C
Published in Applications in plant sciences (01.07.2016)
Published in Applications in plant sciences (01.07.2016)
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Journal Article
Phylogeny and Biogeography of Morus (Moraceae)
Yang, Chen-Xuan, Liu, Shui-Yin, Zerega, Nyree J. C., Stull, Gregory W., Gardner, Elliot M., Tian, Qin, Gu, Wei, Lu, Qing, Folk, Ryan A., Kates, Heather R., Guralnick, Robert P., Soltis, Douglas E., Soltis, Pamela S., Wang, Yue-Hua, Yi, Ting-Shuang
Published in Agronomy (Basel) (01.08.2023)
Published in Agronomy (Basel) (01.08.2023)
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