The next horizon in precision oncology: Proteogenomics to inform cancer diagnosis and treatment
Rodriguez, Henry, Zenklusen, Jean Claude, Staudt, Louis M., Doroshow, James H., Lowy, Douglas R.
Published in Cell (01.04.2021)
Published in Cell (01.04.2021)
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The REMBRANDT study, a large collection of genomic data from brain cancer patients
Gusev, Yuriy, Bhuvaneshwar, Krithika, Song, Lei, Zenklusen, Jean-Claude, Fine, Howard, Madhavan, Subha
Published in Scientific data (14.08.2018)
Published in Scientific data (14.08.2018)
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Resource requirements to accelerate clinical applications of next generation sequencing and radiomics: Workshop commentary and review
Harris, Lyndsay, Shankar, Lalitha K, Hildebrandt, Claire, Rubinstein, Wendy S, Langlais, Kristofor, Rodriguez, Henry, Berger, Adam, Freymann, John, Huang, Erich P, Williams, P Mickey, Claude Zenklusen, Jean, Ochs, Robert, Tezak, Zivana, Sahiner, Berkman
Published in JNCI : Journal of the National Cancer Institute (01.10.2024)
Published in JNCI : Journal of the National Cancer Institute (01.10.2024)
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The International Collaboration for Cancer Classification and Research
Cree, Ian A., Indave Ruiz, Blanca Iciar, Zavadil, Jiri, McKay, James, Olivier, Magali, Kozlakidis, Zisis, Lazar, Alexander J., Hyde, Chris, Holdenrieder, Stefan, Hastings, Ros, Rajpoot, Nasir, Fouchardiere, Arnaud, Rous, Brian, Zenklusen, Jean Claude, Normanno, Nicola, Schilsky, Richard L.
Published in International journal of cancer (01.02.2021)
Published in International journal of cancer (01.02.2021)
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Conference Proceeding
Just Add Data: automated predictive modeling for knowledge discovery and feature selection
Tsamardinos, Ioannis, Charonyktakis, Paulos, Papoutsoglou, Georgios, Borboudakis, Giorgos, Lakiotaki, Kleanthi, Zenklusen, Jean Claude, Juhl, Hartmut, Chatzaki, Ekaterini, Lagani, Vincenzo
Published in NPJ precision oncology (16.06.2022)
Published in NPJ precision oncology (16.06.2022)
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Facilitating a culture of responsible and effective sharing of cancer genome data
Siu, Lillian L, Lawler, Mark, Haussler, David, Knoppers, Bartha Maria, Lewin, Jeremy, Vis, Daniel J, Liao, Rachel G, Andre, Fabrice, Banks, Ian, Barrett, J Carl, Caldas, Carlos, Camargo, Anamaria Aranha, Fitzgerald, Rebecca C, Mao, Mao, Mattison, John E, Pao, William, Sellers, William R, Sullivan, Patrick, Teh, Bin Tean, Ward, Robyn L, ZenKlusen, Jean Claude, Sawyers, Charles L, Voest, Emile E
Published in Nature medicine (01.05.2016)
Published in Nature medicine (01.05.2016)
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Epigenetic-Mediated Dysfunction of the Bone Morphogenetic Protein Pathway Inhibits Differentiation of Glioblastoma-Initiating Cells
Lee, Jeongwu, Son, Myung Jin, Woolard, Kevin, Donin, Nicholas M., Li, Aiguo, Cheng, Chui H., Kotliarova, Svetlana, Kotliarov, Yuri, Walling, Jennifer, Ahn, Susie, Kim, Misuk, Totonchy, Mariam, Cusack, Thomas, Ene, Chibawanye, Ma, Hilary, Su, Qin, Zenklusen, Jean Claude, Zhang, Wei, Maric, Dragan, Fine, Howard A.
Published in Cancer cell (01.01.2008)
Published in Cancer cell (01.01.2008)
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Prediction of Associations between microRNAs and Gene Expression in Glioma Biology
Wuchty, Stefan, Arjona, Dolores, Li, Aiguo, Kotliarov, Yuri, Walling, Jennifer, Ahn, Susie, Zhang, Alice, Maric, Dragan, Anolik, Rachel, Zenklusen, Jean Claude, Fine, Howard A
Published in PloS one (16.02.2011)
Published in PloS one (16.02.2011)
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Journal Article
Localization and characterization of ST7 in cancer
Charong, Nurdina, Patmasiriwat, Pimpicha, Zenklusen, Jean Claude
Published in Journal of cancer research and clinical oncology (01.01.2011)
Published in Journal of cancer research and clinical oncology (01.01.2011)
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Journal Article
Gene pathways and subnetworks distinguish between major glioma subtypes and elucidate potential underlying biology
Wuchty, Stefan, Zhang, Alice, Walling, Jennifer, Ahn, Susie, Li, Aiguo, Quezado, Martha, Oberholtzer, Carl, Zenklusen, Jean-Claude, Fine, Howard A.
Published in Journal of biomedical informatics (01.12.2010)
Published in Journal of biomedical informatics (01.12.2010)
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A Practical Guide to The Cancer Genome Atlas (TCGA)
Wang, Zhining, Jensen, Mark A, Zenklusen, Jean Claude
Published in Methods in molecular biology (Clifton, N.J.) (2016)
Published in Methods in molecular biology (Clifton, N.J.) (2016)
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Journal Article
The Integrated Genomic Landscape of Thymic Epithelial Tumors
Anur, Pavana, McLellan, Mike, Bowlby, Reanne, Hegde, Apurva M., Leiserson, Mark D.M., Sethi, Geetika, Ryan, Michael, Su, Xiaoping, Cherniack, Andrew D., Akbani, Rehan, Spellman, Paul, Weinstein, John N., Raphael, Ben, Zenklusen, Jean Claude, Ally, Adrian, Appelbaum, Elizabeth L., Balasundaram, Miruna, Behera, Madhusmita, Blandino, Giovanni, Bowen, Jay, Carlsen, Rebecca, Carvalho, Andre L., Chin, Lynda, Choe, Gina, Chudamani, Sudha, Cibulskis, Carrie, Cordes, Matthew G., Crain, Daniel, Curley, Erin, Defreitas, Timothy, Dienemann, Hendrik, Facciolo, Francesco, Ferguson, Martin L., Fulton, Robert S., Gabriel, Stacey B., Gardner, Johanna, Gehlenborg, Nils, Gerken, Mark, Getz, Gad, Heiman, David I., Holbrook, Andrea, Hoyle, Alan P., Jones, Corbin D., Jones, Steven J.M., Kasaian, Katayoon, Lai, Phillip H., Lawrence, Michael S., Lin, Pei, Lolla, Laxmi, Lu, Yiling, Ma, Yussanne, Mardis, Elaine R., Meister, Michael, Meng, Shaowu, Meyerson, Matthew, Mills, Gordon B., Moore, Richard A., Morris, Scott, Mose, Lisle E., Muley, Thomas, Naresh, Rashi, Newton, Yulia, Owonikoko, Taofeek, Paulaskis, Joseph, Perou, Charles M., Perrin, Corinne, Radenbaugh, Amie, Ramirez, Nilsa, Rieker, Ralf, Roach, Jeffrey, Sadeghi, Sara, Saksena, Gordon, Schein, Jacqueline E., Schumacher, Steven E., Shelton, Candace, Shi, Yan, Simons, Janae V., Sofia, Heidi J., Sun, Qiang, Tan, Donghui, Tarnuzzer, Roy, Van Den Berg, David J., Veluvolu, Umadevi, Walter, Vonn, Wang, Zhining, Warth, Arne, Weis, Cleo-Aron, Weisenberger, Daniel J., Wilkerson, Matthew D., Wu, Hsin-Ta, Wu, Ye, Zmuda, Erik, Hwang, David, Marino, Mirella, Gokmen-Polar, Yesim, Badve, Sunil, Rajan, Arun, Ströbel, Philipp, Tsao, Ming S., Loehrer, Patrick J.
Published in Cancer cell (12.02.2018)
Published in Cancer cell (12.02.2018)
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Glycogen Synthase Kinase-3 Inhibition Induces Glioma Cell Death through c-MYC, Nuclear Factor-κB, and Glucose Regulation
Kotliarova, Svetlana, Pastorino, Sandra, Kovell, Lara C., Kotliarov, Yuri, Song, Hua, Zhang, Wei, Bailey, Rolanda, Maric, Dragan, Zenklusen, Jean Claude, Lee, Jeongwu, Fine, Howard A.
Published in Cancer research (Chicago, Ill.) (15.08.2008)
Published in Cancer research (Chicago, Ill.) (15.08.2008)
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Journal Article
The NCI Genomic Data Commons
Heath, Allison P., Ferretti, Vincent, Agrawal, Stuti, An, Maksim, Angelakos, James C., Arya, Renuka, Bajari, Rosita, Baqar, Bilal, Barnowski, Justin H. B., Burt, Jeffrey, Catton, Ann, Chan, Brandon F., Chu, Fay, Cullion, Kim, Davidsen, Tanja, Do, Phuong-My, Dompierre, Christian, Ferguson, Martin L., Fitzsimons, Michael S., Ford, Michael, Fukuma, Miyuki, Gaheen, Sharon, Ganji, Gajanan L., Garcia, Tzintzuni I., George, Sameera S., Gerhard, Daniela S., Gerthoffert, Francois, Gomez, Fauzi, Han, Kang, Hernandez, Kyle M., Issac, Biju, Jackson, Richard, Jensen, Mark A., Joshi, Sid, Kadam, Ajinkya, Khurana, Aishmit, Kim, Kyle M. J., Kraft, Victoria E., Li, Shenglai, Lichtenberg, Tara M., Lodato, Janice, Lolla, Laxmi, Martinov, Plamen, Mazzone, Jeffrey A., Miller, Daniel P., Miller, Ian, Miller, Joshua S., Miyauchi, Koji, Murphy, Mark W., Nullet, Thomas, Ogwara, Rowland O., Ortuño, Francisco M., Pedrosa, Jesús, Pham, Phuong L., Popov, Maxim Y., Porter, James J., Powell, Raymond, Rademacher, Karl, Reid, Colin P., Rich, Samantha, Rogel, Bessie, Sahni, Himanso, Savage, Jeremiah H., Schmitt, Kyle A., Simmons, Trevar J., Sislow, Joseph, Spring, Jonathan, Stein, Lincoln, Sullivan, Sean, Tang, Yajing, Thiagarajan, Mathangi, Troyer, Heather D., Wang, Chang, Wang, Zhining, West, Bedford L., Wilmer, Alex, Wilson, Shane, Wu, Kaman, Wysocki, William P., Xiang, Linda, Yamada, Joseph T., Yang, Liming, Yu, Christine, Yung, Christina K., Zenklusen, Jean Claude, Zhang, Junjun, Zhang, Zhenyu, Zhao, Yuanheng, Zubair, Ariz, Staudt, Louis M., Grossman, Robert L.
Published in Nature genetics (01.03.2021)
Published in Nature genetics (01.03.2021)
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NCI Cancer Research Data Commons: Resources to Share Key Cancer Data
Wang, Zhining, Davidsen, Tanja M, Kuffel, Gina R, Addepalli, KanakaDurga, Bell, Amanda, Casas-Silva, Esmeralda, Dingerdissen, Hayley, Farahani, Keyvan, Fedorov, Andrey, Gaheen, Sharon, Grossman, Robert L, Kikinis, Ron, Kim, Erika, Otridge, John, Pihl, Todd, Porter, Melissa, Rodriguez, Henry, Staudt, Louis M, Thangudu, Ratna R, Venkatachari, Sudha, Zenklusen, Jean Claude, Zhang, Xu, Barnholtz-Sloan, Jill S, Kerlavage, Anthony R
Published in Cancer research (Chicago, Ill.) (02.05.2024)
Published in Cancer research (Chicago, Ill.) (02.05.2024)
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The Childhood Cancer Data Initiative: Using the Power of Data to Learn From and Improve Outcomes for Every Child and Young Adult With Pediatric Cancer
Flores-Toro, Joseph A, Jagu, Subhashini, Armstrong, Gregory T, Arons, David F, Aune, Gregory J, Chanock, Stephen J, Hawkins, Douglas S, Heath, Allison, Helman, Lee J, Janeway, Katherine A, Levine, Jason E, Miller, Ellyn, Penberthy, Lynne, Roberts, Charles W M, Shalley, Eve R, Shern, Jack F, Smith, Malcolm A, Staudt, Louis M, Volchenboum, Samuel L, Zhang, Jinghui, Zenklusen, Jean Claude, Lowy, Douglas R, Sharpless, Norman E, Guidry Auvil, Jaime M, Kerlavage, Anthony R, Widemann, Brigitte C, Reaman, Gregory H, Kibbe, Warren A, Doroshow, James H
Published in Journal of clinical oncology (20.08.2023)
Published in Journal of clinical oncology (20.08.2023)
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Genomic changes and gene expression profiles reveal that established glioma cell lines are poorly representative of primary human gliomas
Li, Aiguo, Walling, Jennifer, Kotliarov, Yuri, Center, Angela, Steed, Mary Ellen, Ahn, Susie J, Rosenblum, Mark, Mikkelsen, Tom, Zenklusen, Jean Claude, Fine, Howard A
Published in Molecular cancer research (01.01.2008)
Published in Molecular cancer research (01.01.2008)
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