Starlight: A kernel optimizer for GPU processing
Zeni, Alberto, Del Sozzo, Emanuele, D'Arnese, Eleonora, Conficconi, Davide, Santambrogio, Marco D.
Published in Journal of parallel and distributed computing (01.05.2024)
Published in Journal of parallel and distributed computing (01.05.2024)
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Journal Article
TSUNAMI: A GPU Implementation of the WFA Algorithm
Gerometta, Giulia, Zeni, Alberto, Santambrogio, Marco D.
Published in 2023 32nd International Conference on Parallel Architectures and Compilation Techniques (PACT) (21.10.2023)
Published in 2023 32nd International Conference on Parallel Architectures and Compilation Techniques (PACT) (21.10.2023)
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Conference Proceeding
Surfing the Wavefront of Genome Alignment
Branchini, Beatrice, Gerometta, Giulia, Cicolini, Luisa, Zeni, Alberto, Del Sozzo, Emanuele, Santambrogio, Marco D.
Published in 2022 IEEE International Symposium on Circuits and Systems (ISCAS) (28.05.2022)
Published in 2022 IEEE International Symposium on Circuits and Systems (ISCAS) (28.05.2022)
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Conference Proceeding
On the Genome Sequence Alignment FPGA Acceleration via KSW2z
Zeni, Alberto, Di Donato, Guido Walter, Valle, Alessia Della, Carloni, Filippo, Santambrogio, Marco D.
Published in 2023 IEEE International Symposium on Circuits and Systems (ISCAS) (21.05.2023)
Published in 2023 IEEE International Symposium on Circuits and Systems (ISCAS) (21.05.2023)
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Conference Proceeding
LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment
Zeni, Alberto, Guidi, Giulia, Ellis, Marquita, Ding, Nan, Santambrogio, Marco D., Hofmeyr, Steven, Buluc, Aydin, Oliker, Leonid, Yelick, Katherine
Published in 2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS) (01.05.2020)
Published in 2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS) (01.05.2020)
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Conference Proceeding
Journal Article
Fast Genome Analysis Leveraging Exact String Matching
Branchini, Beatrice, Breschi, Sofia, Zeni, Alberto, Santambrogio, Marco D.
Published in 2022 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) (01.05.2022)
Published in 2022 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) (01.05.2022)
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Conference Proceeding
An FPGA-Based Computing Infrastructure Tailored to Efficiently Scaffold Genome Sequences
Zeni, Alberto, Crespi, Matteo, Di Tucci, Lorenzo, Santambrogio, Marco D.
Published in 2019 IEEE 27th Annual International Symposium on Field-Programmable Custom Computing Machines (FCCM) (01.04.2019)
Published in 2019 IEEE 27th Annual International Symposium on Field-Programmable Custom Computing Machines (FCCM) (01.04.2019)
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Conference Proceeding
New Solution For a (Scaff)Old Problem: an FPGA Approach
Zeni, Alberto, Del Sozzo, Emanuele, Branchini, Beatrice, Di Tucci, Lorenzo, Santambrogio, Marco D.
Published in 2023 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) (01.05.2023)
Published in 2023 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) (01.05.2023)
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Conference Proceeding
The Importance of Being X-Drop: High Performance Genome Alignment on Reconfigurable Hardware
Zeni, Alberto, Di Donato, Guido Walter, Di Tucci, Lorenzo, Rabozzi, Marco, Santambrogio, Marco D.
Published in 2021 IEEE 29th Annual International Symposium on Field-Programmable Custom Computing Machines (FCCM) (01.05.2021)
Published in 2021 IEEE 29th Annual International Symposium on Field-Programmable Custom Computing Machines (FCCM) (01.05.2021)
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Conference Proceeding
circFA: a FPGA-based circular RNA aligner
Zeni, Alberto, Peverelli, Francesco, Cabri, Enrico, di Tucci, Lorenzo, Cerina, Luca, Santambrogio, Marco D.
Published in 2019 IEEE EMBS International Conference on Biomedical & Health Informatics (BHI) (01.05.2019)
Published in 2019 IEEE EMBS International Conference on Biomedical & Health Informatics (BHI) (01.05.2019)
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Conference Proceeding
LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment
Zeni, Alberto, Guidi, Giulia, Ellis, Marquita, Ding, Nan, Santambrogio, Marco D, Hofmeyr, Steven, Buluç, Aydın, Oliker, Leonid, Yelick, Katherine
Year of Publication 12.02.2020
Year of Publication 12.02.2020
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Journal Article
Leveraging Succinct Data Structures for DNA Sequence Mapping on FPGA
Donato, Guido Walter Di, Zeni, Alberto, Tucci, Lorenzo Di, Santambrogio, Marco D.
Published in 2020 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) (01.05.2020)
Published in 2020 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) (01.05.2020)
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Conference Proceeding