Reduction of ZFX levels decreases histone H4 acetylation and increases Pol2 pausing at target promoters
Hsu, Emily, Hutchison, Katherine, Liu, Yao, Nicolet, Charles M, Schreiner, Shannon, Zemke, Nathan R, Farnham, Peggy J
Published in Nucleic acids research (08.07.2024)
Published in Nucleic acids research (08.07.2024)
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Adenovirus small E1A directs activation of Alu transcription at YAP/TEAD- and AP-1-bound enhancers through interactions with the EP400 chromatin remodeler
Cantarella, Simona, Vezzoli, Marco, Carnevali, Davide, Morselli, Marco, Zemke, Nathan R, Montanini, Barbara, Daussy, Coralie F, Wodrich, Harald, Teichmann, Martin, Pellegrini, Matteo, Berk, Arnold J, Dieci, Giorgio, Ferrari, Roberto
Published in Nucleic acids research (09.09.2024)
Published in Nucleic acids research (09.09.2024)
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Adenovirus Small E1A Employs the Lysine Acetylases p300/CBP and Tumor Suppressor Rb to Repress Select Host Genes and Promote Productive Virus Infection
Ferrari, Roberto, Gou, Dawei, Jawdekar, Gauri, Johnson, Sarah A., Nava, Miguel, Su, Trent, Yousef, Ahmed F., Zemke, Nathan R., Pellegrini, Matteo, Kurdistani, Siavash K., Berk, Arnold J.
Published in Cell host & microbe (12.11.2014)
Published in Cell host & microbe (12.11.2014)
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Transcriptomic and ChIP-sequence interrogation of EGFR signaling in HER2+ breast cancer cells reveals a dynamic chromatin landscape and S100 genes as targets
Nava, Miguel, Dutta, Pranabananda, Zemke, Nathan R, Farias-Eisner, Robin, Vadgama, Jaydutt V, Wu, Yanyuan
Published in BMC medical genomics (08.02.2019)
Published in BMC medical genomics (08.02.2019)
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Adenovirus E1A binding to DCAF10 targets proteasomal degradation of RUVBL1/2 AAA+ ATPases required for quaternary assembly of multiprotein machines, innate immunity, and responses to metabolic stress
Zemke, Nathan R, Hsu, Emily, Barshop, William D, Sha, Jihui, Wohlschlegel, James A, Berk, Arnold J
Published in Journal of virology (21.12.2023)
Published in Journal of virology (21.12.2023)
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The dopamine receptor antagonist trifluoperazine prevents phenotype conversion and improves survival in mouse models of glioblastoma
Bhat, Kruttika, Saki, Mohammad, Vlashi, Erina, Cheng, Fei, Duhachek-Muggy, Sara, Alli, Claudia, Yu, Garrett, Medina, Paul, He, Ling, Damoiseaux, Robert, Pellegrini, Matteo, Zemke, Nathan R., Nghiemphu, Phioanh Leia, Cloughesy, Timothy F., Liau, Linda M., Kornblum, Harley I., Pajonk, Frank
Published in Proceedings of the National Academy of Sciences - PNAS (19.05.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (19.05.2020)
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Conserved and divergent gene regulatory programs of the mammalian neocortex
Zemke, Nathan R., Armand, Ethan J., Wang, Wenliang, Lee, Seoyeon, Zhou, Jingtian, Li, Yang Eric, Liu, Hanqing, Tian, Wei, Nery, Joseph R., Castanon, Rosa G., Bartlett, Anna, Osteen, Julia K., Li, Daofeng, Zhuo, Xiaoyu, Xu, Vincent, Chang, Lei, Dong, Keyi, Indralingam, Hannah S., Rink, Jonathan A., Xie, Yang, Miller, Michael, Krienen, Fenna M., Zhang, Qiangge, Taskin, Naz, Ting, Jonathan, Feng, Guoping, McCarroll, Steven A., Callaway, Edward M., Wang, Ting, Lein, Ed S., Behrens, M. Margarita, Ecker, Joseph R., Ren, Bing
Published in Nature (London) (14.12.2023)
Published in Nature (London) (14.12.2023)
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Journal Article
Author Correction: Conserved and divergent gene regulatory programs of the mammalian neocortex
Zemke, Nathan R., Armand, Ethan J., Wang, Wenliang, Lee, Seoyeon, Zhou, Jingtian, Li, Yang Eric, Liu, Hanqing, Tian, Wei, Nery, Joseph R., Castanon, Rosa G., Bartlett, Anna, Osteen, Julia K., Li, Daofeng, Zhuo, Xiaoyu, Xu, Vincent, Chang, Lei, Dong, Keyi, Indralingam, Hannah S., Rink, Jonathan A., Xie, Yang, Miller, Michael, Krienen, Fenna M., Zhang, Qiangge, Taskin, Naz, Ting, Jonathan, Feng, Guoping, McCarroll, Steven A., Callaway, Edward M., Wang, Ting, Lein, Ed S., Behrens, M. Margarita, Ecker, Joseph R., Ren, Bing
Published in Nature (London) (25.01.2024)
Published in Nature (London) (25.01.2024)
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Epigenetic and 3D genome reprogramming during the aging of human hippocampus
Zemke, Nathan R, Lee, Seoyeon, Mamde, Sainath, Yang, Bing, Berchtold, Nicole, Garduño, B Maximiliano, Indralingam, Hannah S, Bartosik, Weronika M, Lau, Pik Ki, Dong, Keyi, Yang, Amanda, Tani, Yasmine, Chen, Chumo, Zeng, Qiurui, Ajith, Varun, Tong, Liqi, Seng, Chanrung, Li, Daofeng, Wang, Ting, Xu, Xiangmin, Ren, Bing
Published in bioRxiv (17.10.2024)
Published in bioRxiv (17.10.2024)
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Journal Article
Evaluating Methods for the Prediction of Cell Type-Specific Enhancers in the Mammalian Cortex
Johansen, Nelson J, Kempynck, Niklas, Zemke, Nathan R, Somasundaram, Saroja, Winter, Seppe De, Hooper, Marcus, Dwivedi, Deepanjali, Lohia, Ruchi, Wehbe, Fabien, Li, Bocheng, Abaffyová, Darina, Armand, Ethan J, Man, Julie De, Eksi, Eren Can, Hecker, Nikolai, Hulselmans, Gert, Konstantakos, Vasilis, Mauduit, David, Mich, John K, Partel, Gabriele, Daigle, Tanya L, Levi, Boaz P, Zhang, Kai, Tanaka, Yoshiaki, Gillis, Jesse, Ting, Jonathan T, Ben-Simon, Yoav, Miller, Jeremy, Ecker, Joseph R, Ren, Bing, Aerts, Stein, Lein, Ed S, Tasic, Bosiljka, Bakken, Trygve E
Published in bioRxiv (21.08.2024)
Published in bioRxiv (21.08.2024)
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Journal Article
SnapATAC2: a fast, scalable and versatile tool for analysis of single-cell omics data
Zhang, Kai, Zemke, Nathan R, Armand, Ethan J, Ren, Bing
Published in bioRxiv : the preprint server for biology (15.09.2023)
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Published in bioRxiv : the preprint server for biology (15.09.2023)
Journal Article
Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate neocortex
Zemke, Nathan R, Armand, Ethan J, Wang, Wenliang, Lee, Seoyeon, Zhou, Jingtian, Li, Yang Eric, Liu, Hanqing, Tian, Wei, Nery, Joseph R, Castanon, Rosa G, Bartlett, Anna, Osteen, Julia K, Li, Daofeng, Zhuo, Xiaoyu, Xu, Vincent, Miller, Michael, Krienen, Fenna M, Zhang, Qiangge, Taskin, Naz, Ting, Jonathan, Feng, Guoping, McCarroll, Steven A, Callaway, Edward M, Wang, Ting, Behrens, M Margarita, Lein, Ed S, Ecker, Joseph R, Ren, Bing
Published in bioRxiv : the preprint server for biology (08.04.2023)
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Published in bioRxiv : the preprint server for biology (08.04.2023)
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