A new strategy to reduce allelic bias in RNA-Seq readmapping
Satya, Ravi Vijaya, Zavaljevski, Nela, Reifman, Jaques
Published in Nucleic acids research (01.09.2012)
Published in Nucleic acids research (01.09.2012)
Get full text
Journal Article
Mechanisms of action of Coxiella burnetii effectors inferred from host-pathogen protein interactions
Wallqvist, Anders, Wang, Hao, Zavaljevski, Nela, Memišević, Vesna, Kwon, Keehwan, Pieper, Rembert, Rajagopala, Seesandra V, Reifman, Jaques
Published in PloS one (27.11.2017)
Published in PloS one (27.11.2017)
Get full text
Journal Article
Composition and variation of respiratory microbiota in healthy military personnel
Hang, Jun, Zavaljevski, Nela, Yang, Yu, Desai, Valmik, Ruck, Richard C, Macareo, Louis R, Jarman, Richard G, Reifman, Jaques, Kuschner, Robert A, Keiser, Paul B
Published in PloS one (07.12.2017)
Published in PloS one (07.12.2017)
Get full text
Journal Article
Mining host-pathogen protein interactions to characterize Burkholderia mallei infectivity mechanisms
Memišević, Vesna, Zavaljevski, Nela, Rajagopala, Seesandra V, Kwon, Keehwan, Pieper, Rembert, DeShazer, David, Reifman, Jaques, Wallqvist, Anders
Published in PLoS computational biology (01.03.2015)
Published in PLoS computational biology (01.03.2015)
Get full text
Journal Article
16S rRNA gene pyrosequencing of reference and clinical samples and investigation of the temperature stability of microbiome profiles
Hang, Jun, Desai, Valmik, Zavaljevski, Nela, Yang, Yu, Lin, Xiaoxu, Satya, Ravi Vijaya, Martinez, Luis J, Blaylock, Jason M, Jarman, Richard G, Thomas, Stephen J, Kuschner, Robert A
Published in Microbiome (16.09.2014)
Published in Microbiome (16.09.2014)
Get full text
Journal Article
A high-throughput pipeline for the design of real-time PCR signatures
Vijaya Satya, Ravi, Kumar, Kamal, Zavaljevski, Nela, Reifman, Jaques
Published in BMC bioinformatics (23.06.2010)
Published in BMC bioinformatics (23.06.2010)
Get full text
Journal Article
AGeS: a software system for microbial genome sequence annotation
Kumar, Kamal, Desai, Valmik, Cheng, Li, Khitrov, Maxim, Grover, Deepak, Satya, Ravi Vijaya, Yu, Chenggang, Zavaljevski, Nela, Reifman, Jaques
Published in PloS one (07.03.2011)
Published in PloS one (07.03.2011)
Get full text
Journal Article
A high-throughput pipeline for designing microarray-based pathogen diagnostic assays
Vijaya Satya, Ravi, Zavaljevski, Nela, Kumar, Kamal, Reifman, Jaques
Published in BMC bioinformatics (10.04.2008)
Published in BMC bioinformatics (10.04.2008)
Get full text
Journal Article
PSPP: a protein structure prediction pipeline for computing clusters
Lee, Michael S, Bondugula, Rajkumar, Desai, Valmik, Zavaljevski, Nela, Yeh, In-Chul, Wallqvist, Anders, Reifman, Jaques
Published in PloS one (16.07.2009)
Published in PloS one (16.07.2009)
Get full text
Journal Article
In silico microarray probe design for diagnosis of multiple pathogens
Vijaya Satya, Ravi, Zavaljevski, Nela, Kumar, Kamal, Bode, Elizabeth, Padilla, Susana, Wasieloski, Leonard, Geyer, Jeanne, Reifman, Jaques
Published in BMC genomics (21.10.2008)
Published in BMC genomics (21.10.2008)
Get full text
Journal Article
QuartetS: a fast and accurate algorithm for large-scale orthology detection
Yu, Chenggang, Zavaljevski, Nela, Desai, Valmik, Reifman, Jaques
Published in Nucleic acids research (01.07.2011)
Published in Nucleic acids research (01.07.2011)
Get full text
Journal Article
DBSecSys: a database of Burkholderia mallei secretion systems
Memišević, Vesna, Kumar, Kamal, Cheng, Li, Zavaljevski, Nela, DeShazer, David, Wallqvist, Anders, Reifman, Jaques
Published in BMC bioinformatics (16.07.2014)
Published in BMC bioinformatics (16.07.2014)
Get full text
Journal Article
Using host-pathogen protein interactions to identify and characterize Francisella tularensis virulence factors
Wallqvist, Anders, Memišević, Vesna, Zavaljevski, Nela, Pieper, Rembert, Rajagopala, Seesandra V, Kwon, Keehwan, Yu, Chenggang, Hoover, Timothy A, Reifman, Jaques
Published in BMC genomics (29.12.2015)
Published in BMC genomics (29.12.2015)
Get full text
Journal Article
Novel Burkholderia mallei Virulence Factors Linked to Specific Host-Pathogen Protein Interactions
Memišević, Vesna, Zavaljevski, Nela, Pieper, Rembert, Rajagopala, Seesandra V., Kwon, Keehwan, Townsend, Katherine, Yu, Chenggang, Yu, Xueping, DeShazer, David, Reifman, Jaques, Wallqvist, Anders
Published in Molecular & cellular proteomics (01.11.2013)
Published in Molecular & cellular proteomics (01.11.2013)
Get full text
Journal Article
Mining Host-Pathogen Protein Interactions to Characterize Burkholderia mallei Infectivity Mechanisms: e1004088
Memisevic, Vesna, Zavaljevski, Nela, Rajagopala, Seesandra V, Kwon, Keehwan, Pieper, Rembert, DeShazer, David, Reifman, Jaques, Wallqvist, Anders
Published in PLoS computational biology (01.03.2015)
Published in PLoS computational biology (01.03.2015)
Get full text
Journal Article
DBSecSys: a database of Burkholderia malleisecretion systems
MemiÅ¡eviÄ, Vesna, Kumar, Kamal, Cheng, Li, Zavaljevski, Nela, DeShazer, David, Wallqvist, Anders, Reifman, Jaques
Published in BMC bioinformatics (16.07.2014)
Published in BMC bioinformatics (16.07.2014)
Get full text
Journal Article