ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data
Zagordi, Osvaldo, Bhattacharya, Arnab, Eriksson, Nicholas, Beerenwinkel, Niko
Published in BMC bioinformatics (26.04.2011)
Published in BMC bioinformatics (26.04.2011)
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Journal Article
Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies
Zagordi, Osvaldo, Klein, Rolf, Däumer, Martin, Beerenwinkel, Niko
Published in Nucleic acids research (01.11.2010)
Published in Nucleic acids research (01.11.2010)
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Journal Article
Probabilistic inference of viral quasispecies subject to recombination
Töpfer, Armin, Zagordi, Osvaldo, Prabhakaran, Sandhya, Roth, Volker, Halperin, Eran, Beerenwinkel, Niko
Published in Journal of computational biology (01.02.2013)
Published in Journal of computational biology (01.02.2013)
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Journal Article
Profiling host ANP32A splicing landscapes to predict influenza A virus polymerase adaptation
Domingues, Patricia, Eletto, Davide, Magnus, Carsten, Turkington, Hannah L., Schmutz, Stefan, Zagordi, Osvaldo, Lenk, Matthias, Beer, Martin, Stertz, Silke, Hale, Benjamin G.
Published in Nature communications (30.07.2019)
Published in Nature communications (30.07.2019)
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Journal Article
Read length versus depth of coverage for viral quasispecies reconstruction
Zagordi, Osvaldo, Däumer, Martin, Beisel, Christian, Beerenwinkel, Niko
Published in PloS one (03.10.2012)
Published in PloS one (03.10.2012)
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Journal Article
Glycosylations in the globular head of the hemagglutinin protein modulate the virulence and antigenic properties of the H1N1 influenza viruses
Medina, Rafael A, Stertz, Silke, Manicassamy, Balaji, Zimmermann, Petra, Sun, Xiangjie, Albrecht, Randy A, Uusi-Kerttula, Hanni, Zagordi, Osvaldo, Belshe, Robert B, Frey, Sharon E, Tumpey, Terrence M, García-Sastre, Adolfo
Published in Science translational medicine (29.05.2013)
Published in Science translational medicine (29.05.2013)
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Journal Article
Metagenomic sequencing complements routine diagnostics in identifying viral pathogens in lung transplant recipients with unknown etiology of respiratory infection
Lewandowska, Dagmara W, Schreiber, Peter W, Schuurmans, Macé M, Ruehe, Bettina, Zagordi, Osvaldo, Bayard, Cornelia, Greiner, Michael, Geissberger, Fabienne D, Capaul, Riccarda, Zbinden, Andrea, Böni, Jürg, Benden, Christian, Mueller, Nicolas J, Trkola, Alexandra, Huber, Michael
Published in PloS one (23.05.2017)
Published in PloS one (23.05.2017)
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Journal Article
Next-generation sequencing of HIV-1 RNA genomes: determination of error rates and minimizing artificial recombination
Di Giallonardo, Francesca, Zagordi, Osvaldo, Duport, Yannick, Leemann, Christine, Joos, Beda, Künzli-Gontarczyk, Marzanna, Bruggmann, Rémy, Beerenwinkel, Niko, Günthard, Huldrych F, Metzner, Karin J
Published in PloS one (18.09.2013)
Published in PloS one (18.09.2013)
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Journal Article
Delineating CD4 dependency of HIV-1: Adaptation to infect low level CD4 expressing target cells widens cellular tropism but severely impacts on envelope functionality
Beauparlant, David, Rusert, Peter, Magnus, Carsten, Kadelka, Claus, Weber, Jacqueline, Uhr, Therese, Zagordi, Osvaldo, Oberle, Corinna, Duenas-Decamp, Maria J, Clapham, Paul R, Metzner, Karin J, Günthard, Huldrych F, Trkola, Alexandra
Published in PLoS pathogens (06.03.2017)
Published in PLoS pathogens (06.03.2017)
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Journal Article
Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples
Lewandowska, Dagmara W, Zagordi, Osvaldo, Geissberger, Fabienne-Desirée, Kufner, Verena, Schmutz, Stefan, Böni, Jürg, Metzner, Karin J, Trkola, Alexandra, Huber, Michael
Published in Microbiome (08.08.2017)
Published in Microbiome (08.08.2017)
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Journal Article
Next-generation sequencing analysis of a cluster of hepatitis C virus infections in a haematology and oncology center
Caraballo Cortes, Kamila, Rosińska, Magdalena, Janiak, Maciej, Stępień, Małgorzata, Zagordi, Osvaldo, Perlejewski, Karol, Osuch, Sylwia, Pawełczyk, Agnieszka, Bukowska-Ośko, Iwona, Płoski, Rafał, Grabarczyk, Piotr, Laskus, Tomasz, Radkowski, Marek
Published in PloS one (22.03.2018)
Published in PloS one (22.03.2018)
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Journal Article
Persistent mammalian orthoreovirus, coxsackievirus and adenovirus co-infection in a child with a primary immunodeficiency detected by metagenomic sequencing: a case report
Lewandowska, Dagmara W, Capaul, Riccarda, Prader, Seraina, Zagordi, Osvaldo, Geissberger, Fabienne-Desirée, Kügler, Martin, Knorr, Marcus, Berger, Christoph, Güngör, Tayfun, Reichenbach, Janine, Shah, Cyril, Böni, Jürg, Zbinden, Andrea, Trkola, Alexandra, Pachlopnik Schmid, Jana, Huber, Michael
Published in BMC infectious diseases (11.01.2018)
Published in BMC infectious diseases (11.01.2018)
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Journal Article
Spouse-to-Spouse Transmission and Evolution of Hypervariable Region 1 and 5' Untranslated Region of Hepatitis C Virus Analyzed by Next-Generation Sequencing
Caraballo Cortes, Kamila, Zagordi, Osvaldo, Jabłońska, Joanna, Pawełczyk, Agnieszka, Kubisa, Natalia, Perlejewski, Karol, Bukowska-Ośko, Iwona, Płoski, Rafał, Radkowski, Marek, Laskus, Tomasz
Published in PloS one (26.02.2016)
Published in PloS one (26.02.2016)
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Journal Article
Ultradeep Pyrosequencing of Hepatitis C Virus Hypervariable Region 1 in Quasispecies Analysis
Radkowski, Marek, Pawełczyk, Agnieszka, Bukowska-Ośko, Iwona, Płoski, Rafał, Laskus, Tomasz, Zagordi, Osvaldo, Caraballo Cortés, Kamila, Berak, Hanna
Published in BioMed research international (01.01.2013)
Published in BioMed research international (01.01.2013)
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Journal Article
Correction to: Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples
Lewandowska, Dagmara W, Zagordi, Osvaldo, Geissberger, Fabienne-Desirée, Kufner, Verena, Schmutz, Stefan, Böni, Jürg, Metzner, Karin J, Trkola, Alexandra, Huber, Michael
Published in Microbiome (12.10.2017)
Published in Microbiome (12.10.2017)
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Journal Article
Finite size corrections to random Boolean networks
Leone, Michele, Pagnani, Andrea, Parisi, Giorgio, Zagordi, Osvaldo
Published in Journal of statistical mechanics (01.12.2006)
Published in Journal of statistical mechanics (01.12.2006)
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