Thyroid hormone signaling specifies cone subtypes in human retinal organoids
Eldred, Kiara C, Hadyniak, Sarah E, Hussey, Katarzyna A, Brenerman, Boris, Zhang, Ping-Wu, Chamling, Xitiz, Sluch, Valentin M, Welsbie, Derek S, Hattar, Samer, Taylor, James, Wahlin, Karl, Zack, Donald J, Johnston, Jr, Robert J
Published in Science (American Association for the Advancement of Science) (12.10.2018)
Published in Science (American Association for the Advancement of Science) (12.10.2018)
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Reproducibility and staging of 3D human retinal organoids across multiple pluripotent stem cell lines
Capowski, Elizabeth E, Samimi, Kayvan, Mayerl, Steven J, Phillips, M Joseph, Pinilla, Isabel, Howden, Sara E, Saha, Jishnu, Jansen, Alex D, Edwards, Kimberly L, Jager, Lindsey D, Barlow, Katherine, Valiauga, Rasa, Erlichman, Zachary, Hagstrom, Anna, Sinha, Divya, Sluch, Valentin M, Chamling, Xitiz, Zack, Donald J, Skala, Melissa C, Gamm, David M
Published in Development (Cambridge) (01.01.2019)
Published in Development (Cambridge) (01.01.2019)
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TiGER: a database for tissue-specific gene expression and regulation
Liu, Xiong, Yu, Xueping, Zack, Donald J, Zhu, Heng, Qian, Jiang
Published in BMC bioinformatics (09.06.2008)
Published in BMC bioinformatics (09.06.2008)
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Journal Article
Photoreceptor Outer Segment-like Structures in Long-Term 3D Retinas from Human Pluripotent Stem Cells
Wahlin, Karl J., Maruotti, Julien A., Sripathi, Srinivasa R., Ball, John, Angueyra, Juan M., Kim, Catherine, Grebe, Rhonda, Li, Wei, Jones, Bryan W., Zack, Donald J.
Published in Scientific reports (10.04.2017)
Published in Scientific reports (10.04.2017)
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Journal Article
ATAC-Seq analysis reveals a widespread decrease of chromatin accessibility in age-related macular degeneration
Wang, Jie, Zibetti, Cristina, Shang, Peng, Sripathi, Srinivasa R., Zhang, Pingwu, Cano, Marisol, Hoang, Thanh, Xia, Shuli, Ji, Hongkai, Merbs, Shannath L., Zack, Donald J., Handa, James T., Sinha, Debasish, Blackshaw, Seth, Qian, Jiang
Published in Nature communications (10.04.2018)
Published in Nature communications (10.04.2018)
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Three-Dimensional Retinal Organoids Facilitate the Investigation of Retinal Ganglion Cell Development, Organization and Neurite Outgrowth from Human Pluripotent Stem Cells
Fligor, Clarisse M., Langer, Kirstin B., Sridhar, Akshayalakshmi, Ren, Yuan, Shields, Priya K., Edler, Michael C., Ohlemacher, Sarah K., Sluch, Valentin M., Zack, Donald J., Zhang, Chi, Suter, Daniel M., Meyer, Jason S.
Published in Scientific reports (28.09.2018)
Published in Scientific reports (28.09.2018)
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Characterization of tissue-specific differential DNA methylation suggests distinct modes of positive and negative gene expression regulation
Wan, Jun, Oliver, Verity F, Wang, Guohua, Zhu, Heng, Zack, Donald J, Merbs, Shannath L, Qian, Jiang
Published in BMC genomics (05.02.2015)
Published in BMC genomics (05.02.2015)
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Expansion of the CRISPR–Cas9 genome targeting space through the use of H1 promoter-expressed guide RNAs
Ranganathan, Vinod, Wahlin, Karl, Maruotti, Julien, Zack, Donald J.
Published in Nature communications (08.08.2014)
Published in Nature communications (08.08.2014)
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A rare penetrant mutation in CFH confers high risk of age-related macular degeneration
Raychaudhuri, Soumya, Seddon, Johanna M, Iartchouk, Oleg, Chin, Kimberly, Tan, Perciliz L, Tai, Albert K, Ripke, Stephan, Gowrisankar, Sivakumar, Vemuri, Soumya, Montgomery, Kate, Yu, Yi, Reynolds, Robyn, Zack, Donald J, Campochiaro, Betsy, Campochiaro, Peter, Katsanis, Nicholas, Daly, Mark J
Published in Nature genetics (01.12.2011)
Published in Nature genetics (01.12.2011)
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Enhanced Functional Genomic Screening Identifies Novel Mediators of Dual Leucine Zipper Kinase-Dependent Injury Signaling in Neurons
Welsbie, Derek S., Mitchell, Katherine L., Jaskula-Ranga, Vinod, Sluch, Valentin M., Yang, Zhiyong, Kim, Jessica, Buehler, Eugen, Patel, Amit, Martin, Scott E., Zhang, Ping-Wu, Ge, Yan, Duan, Yukan, Fuller, John, Kim, Byung-Jin, Hamed, Eman, Chamling, Xitiz, Lei, Lei, Fraser, Iain D.C., Ronai, Ze’ev A., Berlinicke, Cynthia A., Zack, Donald J.
Published in Neuron (Cambridge, Mass.) (21.06.2017)
Published in Neuron (Cambridge, Mass.) (21.06.2017)
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Differentiation of human ESCs to retinal ganglion cells using a CRISPR engineered reporter cell line
Sluch, Valentin M., Davis, Chung-ha O., Ranganathan, Vinod, Kerr, Justin M., Krick, Kellin, Martin, Russ, Berlinicke, Cynthia A., Marsh-Armstrong, Nicholas, Diamond, Jeffrey S., Mao, Hai-Quan, Zack, Donald J.
Published in Scientific reports (13.11.2015)
Published in Scientific reports (13.11.2015)
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Small-molecule–directed, efficient generation of retinal pigment epithelium from human pluripotent stem cells
Maruotti, Julien, Sripathi, Srinivas R., Bharti, Kapil, Fuller, John, Wahlin, Karl J., Ranganathan, Vinod, Sluch, Valentin M., Berlinicke, Cynthia A., Davis, Janine, Kim, Catherine, Zhao, Lijun, Wan, Jun, Qian, Jiang, Corneo, Barbara, Temple, Sally, Dubey, Ramin, Olenyuk, Bogdan Z., Bhutto, Imran, Lutty, Gerard A., Zack, Donald J.
Published in Proceedings of the National Academy of Sciences - PNAS (01.09.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (01.09.2015)
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Single-cell transcriptomic reveals molecular diversity and developmental heterogeneity of human stem cell-derived oligodendrocyte lineage cells
Chamling, Xitiz, Kallman, Alyssa, Fang, Weixiang, Berlinicke, Cynthia A., Mertz, Joseph L., Devkota, Prajwal, Pantoja, Itzy E. Morales, Smith, Matthew D., Ji, Zhicheng, Chang, Calvin, Kaushik, Aniruddha, Chen, Liben, Whartenby, Katharine A., Calabresi, Peter A., Mao, Hai-Quan, Ji, Hongkai, Wang, Tza-Huei, Zack, Donald J.
Published in Nature communications (28.01.2021)
Published in Nature communications (28.01.2021)
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High-throughput and high-content bioassay enables tuning of polyester nanoparticles for cellular uptake, endosomal escape, and systemic in vivo delivery of mRNA
Rui, Yuan, Wilson, David R, Tzeng, Stephany Y, Yamagata, Hannah M, Sudhakar, Deepti, Conge, Marranne, Berlinicke, Cynthia A, Zack, Donald J, Tuesca, Anthony, Green, Jordan J
Published in Science advances (07.01.2022)
Published in Science advances (07.01.2022)
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Intercellular communication atlas reveals Oprm1 as a neuroprotective factor for retinal ganglion cells
Qian, Cheng, Xin, Ying, Qi, Cheng, Wang, Hui, Dong, Bryan C., Zack, Donald J., Blackshaw, Seth, Hattar, Samer, Zhou, Feng-Quan, Qian, Jiang
Published in Nature communications (11.03.2024)
Published in Nature communications (11.03.2024)
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Inactivation of the microRNA-183/96/182 cluster results in syndromic retinal degeneration
Lumayag, Stephen, Haldin, Caroline E, Corbett, Nicola J, Wahlin, Karl J, Cowan, Colleen, Turturro, Sanja, Larsen, Peter E, Kovacs, Beatrix, Witmer, P Dane, Valle, David, Zack, Donald J, Nicholson, Daniel A, Xu, Shunbin
Published in Proceedings of the National Academy of Sciences - PNAS (05.02.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (05.02.2013)
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Journal Article
Aquaporin 4 is not present in normal porcine and human lamina cribrosa
Kimball, Elizabeth C, Quillen, Sarah, Pease, Mary E, Keuthan, Casey, Nagalingam, Aru, Zack, Donald J, Johnson, Thomas V, Quigley, Harry A
Published in PloS one (16.06.2022)
Published in PloS one (16.06.2022)
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Traumatic Axonal Injury in the Optic Nerve: The Selective Role of SARM1 in the Evolution of Distal Axonopathy
Alexandris, Athanasios S, Lee, Youngrim, Lehar, Mohamed, Alam, Zahra, McKenney, James, Perdomo, Dianela, Ryu, Jiwon, Welsbie, Derek, Zack, Donald J, Koliatsos, Vassilis E
Published in Journal of neurotrauma (01.08.2023)
Published in Journal of neurotrauma (01.08.2023)
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Regional Gene Expression in the Retina, Optic Nerve Head, and Optic Nerve of Mice with Optic Nerve Crush and Experimental Glaucoma
Keuthan, Casey J, Schaub, Julie A, Wei, Meihan, Fang, Weixiang, Quillen, Sarah, Kimball, Elizabeth, Johnson, Thomas V, Ji, Hongkai, Zack, Donald J, Quigley, Harry A
Published in International journal of molecular sciences (01.09.2023)
Published in International journal of molecular sciences (01.09.2023)
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Differential expression patterns of phospholipase D isoforms 1 and 2 in the mammalian brain and retina
Barber, Casey N., Goldschmidt, Hana L., Lilley, Brendan, Bygrave, Alexei M., Johnson, Richard C., Huganir, Richard L., Zack, Donald J., Raben, Daniel M.
Published in Journal of lipid research (01.08.2022)
Published in Journal of lipid research (01.08.2022)
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