Quantifying cooperative multisite binding in the hub protein LC8 through Bayesian inference
Estelle, Aidan B, George, August, Barbar, Elisar J, Zuckerman, Daniel M
Published in PLoS computational biology (01.04.2023)
Published in PLoS computational biology (01.04.2023)
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Journal Article
Connexin-46/50 in a dynamic lipid environment resolved by CryoEM at 1.9 Å
Flores, Jonathan A., Haddad, Bassam G., Dolan, Kimberly A., Myers, Janette B., Yoshioka, Craig C., Copperman, Jeremy, Zuckerman, Daniel M., Reichow, Steve L.
Published in Nature communications (28.08.2020)
Published in Nature communications (28.08.2020)
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Journal Article
Efficient Atomistic Simulation of Pathways and Calculation of Rate Constants for a Protein–Peptide Binding Process: Application to the MDM2 Protein and an Intrinsically Disordered p53 Peptide
Zwier, Matthew C, Pratt, Adam J, Adelman, Joshua L, Kaus, Joseph W, Zuckerman, Daniel M, Chong, Lillian T
Published in The journal of physical chemistry letters (01.09.2016)
Published in The journal of physical chemistry letters (01.09.2016)
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Journal Article
Steady-state simulations using weighted ensemble path sampling
Bhatt, Divesh, Zhang, Bin W, Zuckerman, Daniel M
Published in The Journal of chemical physics (07.07.2010)
Published in The Journal of chemical physics (07.07.2010)
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Journal Article
WESTPA: An Interoperable, Highly Scalable Software Package for Weighted Ensemble Simulation and Analysis
Zwier, Matthew C, Adelman, Joshua L, Kaus, Joseph W, Pratt, Adam J, Wong, Kim F, Rego, Nicholas B, Suárez, Ernesto, Lettieri, Steven, Wang, David W, Grabe, Michael, Zuckerman, Daniel M, Chong, Lillian T
Published in Journal of chemical theory and computation (10.02.2015)
Published in Journal of chemical theory and computation (10.02.2015)
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Journal Article
Middle-way flexible docking: Pose prediction using mixed-resolution Monte Carlo in estrogen receptor α
Spiriti, Justin, Subramanian, Sundar Raman, Palli, Rohith, Wu, Maria, Zuckerman, Daniel M
Published in PloS one (23.04.2019)
Published in PloS one (23.04.2019)
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Journal Article
A kinetic mechanism for enhanced selectivity of membrane transport
Bisignano, Paola, Lee, Michael A, George, August, Zuckerman, Daniel M, Grabe, Michael, Rosenberg, John M
Published in PLoS computational biology (01.07.2020)
Published in PLoS computational biology (01.07.2020)
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Journal Article
Simultaneous Computation of Dynamical and Equilibrium Information Using a Weighted Ensemble of Trajectories
Suárez, Ernesto, Lettieri, Steven, Zwier, Matthew C, Stringer, Carsen A, Subramanian, Sundar Raman, Chong, Lillian T, Zuckerman, Daniel M
Published in Journal of chemical theory and computation (08.07.2014)
Published in Journal of chemical theory and computation (08.07.2014)
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Journal Article
Simulations of the Alternating Access Mechanism of the Sodium Symporter Mhp1
Adelman, Joshua L., Dale, Amy L., Zwier, Matthew C., Bhatt, Divesh, Chong, Lillian T., Zuckerman, Daniel M., Grabe, Michael
Published in Biophysical journal (16.11.2011)
Published in Biophysical journal (16.11.2011)
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Journal Article
Supramolecular self assembly of nanodrill-like structures for intracellular delivery
Ashwanikumar, N., Plaut, Justin S., Mostofian, Barmak, Patel, Siddharth, Kwak, Peter, Sun, Conroy, McPhail, Kerry, Zuckerman, Daniel M., Esener, Sadik C., Sahay, Gaurav
Published in Journal of controlled release (28.07.2018)
Published in Journal of controlled release (28.07.2018)
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Journal Article
Morphodynamical cell state description via live-cell imaging trajectory embedding
Copperman, Jeremy, Gross, Sean M., Chang, Young Hwan, Heiser, Laura M., Zuckerman, Daniel M.
Published in Communications biology (04.05.2023)
Published in Communications biology (04.05.2023)
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