Capturing non-local interactions by long short-term memory bidirectional recurrent neural networks for improving prediction of protein secondary structure, backbone angles, contact numbers and solvent accessibility
Heffernan, Rhys, Yang, Yuedong, Paliwal, Kuldip, Zhou, Yaoqi
Published in Bioinformatics (Oxford, England) (15.09.2017)
Published in Bioinformatics (Oxford, England) (15.09.2017)
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Astronomical forcing of a Middle Permian chert sequence in Chaohu, South China
Yao, Xu, Zhou, Yaoqi, Hinnov, Linda A.
Published in Earth and planetary science letters (15.07.2015)
Published in Earth and planetary science letters (15.07.2015)
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Real-time reliable determination of binding kinetics of DNA hybridization using a multi-channel graphene biosensor
Xu, Shicai, Zhan, Jian, Man, Baoyuan, Jiang, Shouzhen, Yue, Weiwei, Gao, Shoubao, Guo, Chengang, Liu, Hanping, Li, Zhenhua, Wang, Jihua, Zhou, Yaoqi
Published in Nature communications (21.03.2017)
Published in Nature communications (21.03.2017)
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Improving prediction of secondary structure, local backbone angles, and solvent accessible surface area of proteins by iterative deep learning
Heffernan, Rhys, Paliwal, Kuldip, Lyons, James, Dehzangi, Abdollah, Sharma, Alok, Wang, Jihua, Sattar, Abdul, Yang, Yuedong, Zhou, Yaoqi
Published in Scientific reports (22.06.2015)
Published in Scientific reports (22.06.2015)
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Single‐sequence‐based prediction of protein secondary structures and solvent accessibility by deep whole‐sequence learning
Heffernan, Rhys, Paliwal, Kuldip, Lyons, James, Singh, Jaswinder, Yang, Yuedong, Zhou, Yaoqi
Published in Journal of computational chemistry (05.10.2018)
Published in Journal of computational chemistry (05.10.2018)
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SPIDER2: A Package to Predict Secondary Structure, Accessible Surface Area, and Main-Chain Torsional Angles by Deep Neural Networks
Yang, Yuedong, Heffernan, Rhys, Paliwal, Kuldip, Lyons, James, Dehzangi, Abdollah, Sharma, Alok, Wang, Jihua, Sattar, Abdul, Zhou, Yaoqi
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2017)
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2017)
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Elemental and Sr-Nd-Pb-Hf isotope signatures of Early Cretaceous magmatic rocks in the Wulian area, eastern Shandong; implications for crust-mantle interaction at the edge of the Sulu collisional orogenic belt
Du Qing, Du Qing, Meng Fanchao, Meng Fanchao, Kerr, Andrew C, Chen Yong, Chen Yong, Tian Yulu, Tian Yulu, Wu Zhiping, Wu Zhiping, Zhou Yaoqi, Zhou Yaoqi
Published in Lithosphere (01.01.2022)
Published in Lithosphere (01.01.2022)
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Structural insights into the histone H1-nucleosome complex
Zhou, Bing-Rui, Feng, Hanqiao, Kato, Hidenori, Dia, Liang, Yang, Yuedong, Zhou, Yaoqi, Bai, Yawen
Published in Proceedings of the National Academy of Sciences - PNAS (26.11.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (26.11.2013)
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SPIN2: Predicting sequence profiles from protein structures using deep neural networks
O'Connell, James, Li, Zhixiu, Hanson, Jack, Heffernan, Rhys, Lyons, James, Paliwal, Kuldip, Dehzangi, Abdollah, Yang, Yuedong, Zhou, Yaoqi
Published in Proteins, structure, function, and bioinformatics (01.06.2018)
Published in Proteins, structure, function, and bioinformatics (01.06.2018)
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Sequence-based prediction of protein-peptide binding sites using support vector machine
Taherzadeh, Ghazaleh, Yang, Yuedong, Zhang, Tuo, Liew, Alan Wee-Chung, Zhou, Yaoqi
Published in Journal of computational chemistry (15.05.2016)
Published in Journal of computational chemistry (15.05.2016)
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