TPM, FPKM, or Normalized Counts? A Comparative Study of Quantification Measures for the Analysis of RNA-seq Data from the NCI Patient-Derived Models Repository
Zhao, Yingdong, Li, Ming-Chung, Konaté, Mariam M, Chen, Li, Das, Biswajit, Karlovich, Chris, Williams, P. Mickey, Evrard, Yvonne A, Doroshow, James H, McShane, Lisa M
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Published in Journal of translational medicine (22.06.2021)
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Lactate dehydrogenase D serves as a novel biomarker for prognosis and immune infiltration in lung adenocarcinoma
Zhang, Yu, Zhang, Tianyi, Zhao, Yingdong, Wu, Hongdi, Zhen, Qiang, Zhu, Suwei, Hou, Shaoshuai
Published in BMC cancer (16.08.2023)
Published in BMC cancer (16.08.2023)
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Pharmacogenomics of in vitro response of the NCI-60 cancer cell line panel to Indian natural products
Sankaran, Hari, Negi, Simarjeet, McShane, Lisa M, Zhao, Yingdong, Krushkal, Julia
Published in BMC cancer (07.05.2022)
Published in BMC cancer (07.05.2022)
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Discovery of pathway-independent protein signatures associated with clinical outcome in human cancer cohorts
Konaté, Mariam M, Li, Ming-Chung, McShane, Lisa M, Zhao, Yingdong
Published in Scientific reports (11.11.2022)
Published in Scientific reports (11.11.2022)
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MicroRNA Expression Differentiates Histology and Predicts Survival of Lung Cancer
Landi, Maria Teresa, Zhao, Yingdong, Rotunno, Melissa, Koshiol, Jill, Liu, Hui, Bergen, Andrew W, Rubagotti, Maurizia, Goldstein, Alisa M, Linnoila, Ilona, Marincola, Francesco M, Tucker, Margaret A, Bertazzi, Pier Alberto, Pesatori, Angela C, Caporaso, Neil E, McShane, Lisa M, Wang, Ena
Published in Clinical cancer research (15.01.2010)
Published in Clinical cancer research (15.01.2010)
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Identification of genomic signatures in bone marrow associated with clinical response of CD19 CAR T-cell therapy
Shao, Lipei, Iyer, Avinash, Zhao, Yingdong, Somerville, Rob, Panch, Sandhya, Pelayo, Alejandra, Stroncek, David F, Jin, Ping
Published in Scientific reports (18.02.2022)
Published in Scientific reports (18.02.2022)
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Insights into gemcitabine resistance in pancreatic cancer: association with metabolic reprogramming and TP53 pathogenicity in patient derived xenografts
Konaté, Mariam M, Krushkal, Julia, Li, Ming-Chung, Chen, Li, Kotliarov, Yuri, Palmisano, Alida, Pauly, Rini, Xie, Qian, Williams, P. Mickey, McShane, Lisa M, Zhao, Yingdong
Published in Journal of translational medicine (05.08.2024)
Published in Journal of translational medicine (05.08.2024)
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A signature of immune function genes associated with recurrence-free survival in breast cancer patients
Ascierto, Maria Libera, Kmieciak, Maciej, Idowu, Michael O., Manjili, Rose, Zhao, Yingdong, Grimes, Margaret, Dumur, Catherine, Wang, Ena, Ramakrishnan, Viswanathan, Wang, Xiang-Yang, Bear, Harry D., Marincola, Francesco M., Manjili, Masoud H.
Published in Breast cancer research and treatment (01.02.2012)
Published in Breast cancer research and treatment (01.02.2012)
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Association of changes in expression of HDAC and SIRT genes after drug treatment with cancer cell line sensitivity to kinase inhibitors
Krushkal, Julia, Zhao, Yingdong, Roney, Kyle, Zhu, Weimin, Brooks, Alan, Wilsker, Deborah, Parchment, Ralph E, McShane, Lisa M, Doroshow, James H
Published in Epigenetics (01.12.2024)
Published in Epigenetics (01.12.2024)
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Influence of Quercetin-Rich Food Intake on microRNA Expression in Lung Cancer Tissues
LAM, Tram K, SHAO, Stephanie, YINGDONG ZHAO, MARINCOLA, Francesco, PESATORI, Angela, BERTAZZI, Pier Alberto, CAPORASO, Neil E, ENA WANG, LANDI, Maria Teresa
Published in Cancer epidemiology, biomarkers & prevention (01.12.2012)
Published in Cancer epidemiology, biomarkers & prevention (01.12.2012)
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Genome-wide profiling of retroviral DNA integration and its effect on clinical pre-infusion CAR T-cell products
Shao, Lipei, Shi, Rongye, Zhao, Yingdong, Liu, Hui, Lu, Alexander, Ma, Jinxia, Cai, Yihua, Fuksenko, Tatyana, Pelayo, Alejandra, Shah, Nirali N, Kochenderfer, James N, Norberg, Scott M, Hinrichs, Christian, Highfill, Steven L, Somerville, Robert P, Panch, Sandhya R, Jin, Ping, Stroncek, David F
Published in Journal of translational medicine (08.11.2022)
Published in Journal of translational medicine (08.11.2022)
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The NCI Transcriptional Pharmacodynamics Workbench: A Tool to Examine Dynamic Expression Profiling of Therapeutic Response in the NCI-60 Cell Line Panel
Monks, Anne, Zhao, Yingdong, Hose, Curtis, Hamed, Hossein, Krushkal, Julia, Fang, Jianwen, Sonkin, Dmitriy, Palmisano, Alida, Polley, Eric C, Fogli, Laura K, Konaté, Mariam M, Miller, Sarah B, Simpson, Melanie A, Voth, Andrea Regier, Li, Ming-Chung, Harris, Erik, Wu, Xiaolin, Connelly, John W, Rapisarda, Annamaria, Teicher, Beverly A, Simon, Richard, Doroshow, James H
Published in Cancer research (Chicago, Ill.) (15.12.2018)
Published in Cancer research (Chicago, Ill.) (15.12.2018)
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Association of IFN-γ Signal Transduction Defects with Impaired HLA Class I Antigen Processing in Melanoma Cell Lines
RESPA, Annedore, BUKUR, Juergen, FERRONE, Soldano, PAWELEC, Graham, YINGDONG ZHAO, WANG, Ena, MARINCOLA, Francesco M, SELIGER, Barbara
Published in Clinical cancer research (01.05.2011)
Published in Clinical cancer research (01.05.2011)
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Single cell sequencing reveals gene expression signatures associated with bone marrow stromal cell subpopulations and time in culture
Liu, Shutong, Stroncek, David F, Zhao, Yingdong, Chen, Victoria, Shi, Rongye, Chen, Jinguo, Ren, Jiaqiang, Liu, Hui, Bae, Hee Joon, Highfill, Steven L, Jin, Ping
Published in Journal of translational medicine (11.01.2019)
Published in Journal of translational medicine (11.01.2019)
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Analysis of Gene Expression Data Using BRB-Array Tools
Simon, Richard, Lam, Amy, Li, Ming-Chung, Ngan, Michael, Menenzes, Supriya, Zhao, Yingdong
Published in Cancer informatics (01.01.2007)
Published in Cancer informatics (01.01.2007)
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Molecular genomic features associated with in vitro response of the NCI‐60 cancer cell line panel to natural products
Krushkal, Julia, Negi, Simarjeet, Yee, Laura M., Evans, Jason R., Grkovic, Tanja, Palmisano, Alida, Fang, Jianwen, Sankaran, Hari, McShane, Lisa M., Zhao, Yingdong, O'Keefe, Barry R.
Published in Molecular oncology (01.02.2021)
Published in Molecular oncology (01.02.2021)
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Changes in soil-water content and heat transport under different simulated systems of drip irrigation in gravel-mulched fields
Zhao, Wenju, Wang, Yali, Hu, Junhong, Li, Zongli, Zhao, Yingdong, Qi, Guihua
Published in Water science & technology. Water supply (01.01.2022)
Published in Water science & technology. Water supply (01.01.2022)
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