Bulk tissue cell type deconvolution with multi-subject single-cell expression reference
Wang, Xuran, Park, Jihwan, Susztak, Katalin, Zhang, Nancy R., Li, Mingyao
Published in Nature communications (22.01.2019)
Published in Nature communications (22.01.2019)
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SAVER: gene expression recovery for single-cell RNA sequencing
Huang, Mo, Wang, Jingshu, Torre, Eduardo, Dueck, Hannah, Shaffer, Sydney, Bonasio, Roberto, Murray, John I., Raj, Arjun, Li, Mingyao, Zhang, Nancy R.
Published in Nature methods (01.07.2018)
Published in Nature methods (01.07.2018)
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Data denoising with transfer learning in single-cell transcriptomics
Wang, Jingshu, Agarwal, Divyansh, Huang, Mo, Hu, Gang, Zhou, Zilu, Ye, Chengzhong, Zhang, Nancy R.
Published in Nature methods (01.09.2019)
Published in Nature methods (01.09.2019)
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Causal inference for heritable phenotypic risk factors using heterogeneous genetic instruments
Wang, Jingshu, Zhao, Qingyuan, Bowden, Jack, Hemani, Gibran, Davey Smith, George, Small, Dylan S, Zhang, Nancy R
Published in PLoS genetics (22.06.2021)
Published in PLoS genetics (22.06.2021)
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Opposing Functions of Interferon Coordinate Adaptive and Innate Immune Responses to Cancer Immune Checkpoint Blockade
Benci, Joseph L., Johnson, Lexus R., Choa, Ruth, Xu, Yuanming, Qiu, Jingya, Zhou, Zilu, Xu, Bihui, Ye, Darwin, Nathanson, Katherine L., June, Carl H., Wherry, E. John, Zhang, Nancy R., Ishwaran, Hemant, Hellmann, Matthew D., Wolchok, Jedd D., Kambayashi, Taku, Minn, Andy J.
Published in Cell (08.08.2019)
Published in Cell (08.08.2019)
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Surface protein imputation from single cell transcriptomes by deep neural networks
Zhou, Zilu, Ye, Chengzhong, Wang, Jingshu, Zhang, Nancy R.
Published in Nature communications (31.01.2020)
Published in Nature communications (31.01.2020)
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Clinical Utility of the Combined Positive Score for Programmed Death Ligand-1 Expression and the Approval of Pembrolizumab for Treatment of Gastric Cancer
Kulangara, Karina, Zhang, Nancy, Corigliano, Ellie, Guerrero, Lindsay, Waldroup, Stephanie, Jaiswal, Dipeshkumar, Ms, Malinka Jansson, Shah, Supriya, Hanks, Debra, Wang, Jiangdian, Lunceford, Jared, Savage, Mary J, Juco, Jonathan, Emancipator, Kenneth
Published in Archives of pathology & laboratory medicine (1976) (01.03.2019)
Published in Archives of pathology & laboratory medicine (1976) (01.03.2019)
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Organization of the human intestine at single-cell resolution
Hickey, John W., Becker, Winston R., Nevins, Stephanie A., Horning, Aaron, Perez, Almudena Espin, Zhu, Chenchen, Zhu, Bokai, Wei, Bei, Chiu, Roxanne, Chen, Derek C., Cotter, Daniel L., Esplin, Edward D., Weimer, Annika K., Caraccio, Chiara, Venkataraaman, Vishal, Schürch, Christian M., Black, Sarah, Brbić, Maria, Cao, Kaidi, Chen, Shuxiao, Zhang, Weiruo, Monte, Emma, Zhang, Nancy R., Ma, Zongming, Leskovec, Jure, Zhang, Zhengyan, Lin, Shin, Longacre, Teri, Plevritis, Sylvia K., Lin, Yiing, Nolan, Garry P., Greenleaf, William J., Snyder, Michael
Published in Nature (London) (20.07.2023)
Published in Nature (London) (20.07.2023)
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Gene expression distribution deconvolution in single-cell RNA sequencing
Wang, Jingshu, Huang, Mo, Torre, Eduardo, Dueck, Hannah, Shaffer, Sydney, Murray, John, Raj, Arjun, Li, Mingyao, Zhang, Nancy R.
Published in Proceedings of the National Academy of Sciences - PNAS (10.07.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (10.07.2018)
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CODEX: a normalization and copy number variation detection method for whole exome sequencing
Jiang, Yuchao, Oldridge, Derek A, Diskin, Sharon J, Zhang, Nancy R
Published in Nucleic acids research (31.03.2015)
Published in Nucleic acids research (31.03.2015)
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BRCA locus-specific loss of heterozygosity in germline BRCA1 and BRCA2 carriers
Maxwell, Kara N., Wubbenhorst, Bradley, Wenz, Brandon M., De Sloover, Daniel, Pluta, John, Emery, Lyndsey, Barrett, Amanda, Kraya, Adam A., Anastopoulos, Ioannis N., Yu, Shun, Jiang, Yuchao, Chen, Hao, Zhang, Nancy R., Hackman, Nicole, D’Andrea, Kurt, Daber, Robert, Morrissette, Jennifer J. D., Mitra, Nandita, Feldman, Michael, Domchek, Susan M., Nathanson, Katherine L.
Published in Nature communications (22.08.2017)
Published in Nature communications (22.08.2017)
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CODEX2: full-spectrum copy number variation detection by high-throughput DNA sequencing
Jiang, Yuchao, Wang, Rujin, Urrutia, Eugene, Anastopoulos, Ioannis N, Nathanson, Katherine L, Zhang, Nancy R
Published in Genome Biology (26.11.2018)
Published in Genome Biology (26.11.2018)
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