Functional normalization of 450k methylation array data improves replication in large cancer studies
Fortin, Jean-Philippe, Labbe, Aurélie, Lemire, Mathieu, Zanke, Brent W, Hudson, Thomas J, Fertig, Elana J, Greenwood, Celia Mt, Hansen, Kasper D
Published in Genome biology (03.12.2014)
Published in Genome biology (03.12.2014)
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Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray
Chen, Yi-an, Lemire, Mathieu, Choufani, Sanaa, Butcher, Darci T., Grafodatskaya, Daria, Zanke, Brent W., Gallinger, Steven, Hudson, Thomas J., Weksberg, Rosanna
Published in Epigenetics (01.02.2013)
Published in Epigenetics (01.02.2013)
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Long-range epigenetic regulation is conferred by genetic variation located at thousands of independent loci
Lemire, Mathieu, Zaidi, Syed H E, Ban, Maria, Ge, Bing, Aïssi, Dylan, Germain, Marine, Kassam, Irfahan, Wang, Mike, Zanke, Brent W, Gagnon, France, Morange, Pierre-Emmanuel, Trégouët, David-Alexandre, Wells, Philip S, Sawcer, Stephen, Gallinger, Steven, Pastinen, Tomi, Hudson, Thomas J
Published in Nature communications (26.02.2015)
Published in Nature communications (26.02.2015)
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CFH and ARMS2 genetic risk determines progression to neovascular age-related macular degeneration after antioxidant and zinc supplementation
Vavvas, Demetrios G., Βάββας, Δημήτριoς Γ., Small, Kent W., Awh, Carl C., Zanke, Brent W., Tibshirani, Robert J., Kustra, Rafal
Published in Proceedings of the National Academy of Sciences - PNAS (23.01.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (23.01.2018)
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Genome-wide association scan identifies a colorectal cancer susceptibility locus on 11q23 and replicates risk loci at 8q24 and 18q21
Farrington, Susan M, Schmidt, Carsten O, Kustra, Rafal, Chang-Claude, Jenny, Carvajal-Carmona, Luis, Cetnarskyj, Roseanne, Broderick, Peter, Wilkening, Stefan, Webb, Emily, Kidokoro, Tomohide, Montpetit, Alexandre, Tenesa, Albert, Ballinger, Dennis, Brenner, Hermann, Moreno, Victor, Tepel, Jürgen, Rozek, Laura, Porteous, Mary E, Gallinger, Steven, Starr, John M, Nakamura, Yusuke, Buch, Stephan, Hampe, Jochen, Hoffmeister, Michael, Matsuda, Koichi, Reid, Fiona J L, Haq, Naila, Pharoah, Paul D P, Canzian, Federico, Tomlinson, Ian P M, Vijayakrishnan, Jayaram, Houlston, Richard S, Hudson, Thomas J, Deary, Ian J, Barnetson, Rebecca A, Kavoussanakis, Kostas, Semple, Colin, Cartwright, Nicola, Gruber, Stephen B, Dunlop, Malcolm G, Koessler, Thibaud, Prendergast, James G D, Rangrej, Jagadish, Clark, Andrew J, Schafmayer, Clemens, Campbell, Harry, Howarth, Kimberley, Capella, Gabriel, Völzke, Henry, Rennert, Gad, Smith, Lorna A, Zanke, Brent W, Greenwood, Celia M T, Kemp, Zoe, Schreiber, Stefan, Walker, Marion, Theodoratou, Evropi
Published in Nature genetics (01.05.2008)
Published in Nature genetics (01.05.2008)
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Genome-wide association scan identifies a colorectal cancer susceptibility locus on chromosome 8q24
Zanke, Brent W, Bezieau, Stephane, Kury, Sebastien, Green, Roger, Chanock, Stephen J, Campbell, Harry, Gallinger, Steven, Cotterchio, Michelle, Blanche, Helene, Younghusband, Ban, Hudson, Thomas J, Tubacher, Emmanuel, Crowdy, Edgar, Farrington, Susan M, Roumy, Stéphanie, Olivier, Jean-François, Green, Jane, Campbell, Peter, Kustra, Rafal, O'Shea, Anne Marie, Porteous, Mary E M, Montpetit, Alexandre, Ferretti, Vincent, Prendergast, James, Sundararajan, Saravanan, Zogopoulos, George, Newcomb, Polly, Chiang, Theodore, Robidoux, Frédérick, Bonaiti-Pellié, Catherine, Buecher, Bruno, Tenesa, Albert, Olschwang, Sylviane, Sahbatou, Mourad, Riboli, Elio, Laflamme, Philippe, Rangrej, Jagadish, Sladek, Robert, Thomas, Gilles, Greenwood, Celia MT, McLaughlin, John, Potter, John, Dunlop, Malcolm G
Published in Nature genetics (01.08.2007)
Published in Nature genetics (01.08.2007)
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CFH and ARMS2 Genetic Polymorphisms Predict Response to Antioxidants and Zinc in Patients with Age-related Macular Degeneration
Awh, Carl C., MD, Lane, Anne-Marie, MPH, Hawken, Steven, MSc, Zanke, Brent, MD, PhD, Kim, Ivana K., MD
Published in Ophthalmology (Rochester, Minn.) (01.11.2013)
Published in Ophthalmology (Rochester, Minn.) (01.11.2013)
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Re: Chew et al.: No clinically significant association between CFH and ARMS2 genotypes and response to nutritional supplements: AREDS report number 38 (Ophthalmology 2014;121:2173-80)
Awh, Carl C., MD, Zanke, Brent W., MD, PhD
Published in Ophthalmology (Rochester, Minn.) (01.08.2015)
Published in Ophthalmology (Rochester, Minn.) (01.08.2015)
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Meta-analysis of new genome-wide association studies of colorectal cancer risk
Peters, Ulrike, Hutter, Carolyn M., Hsu, Li, Schumacher, Fredrick R., Conti, David V., Carlson, Christopher S., Edlund, Christopher K., Haile, Robert W., Gallinger, Steven, Zanke, Brent W., Lemire, Mathieu, Rangrej, Jagadish, Vijayaraghavan, Raakhee, Chan, Andrew T., Hazra, Aditi, Hunter, David J., Ma, Jing, Fuchs, Charles S., Giovannucci, Edward L., Kraft, Peter, Liu, Yan, Chen, Lin, Jiao, Shuo, Makar, Karen W., Taverna, Darin, Gruber, Stephen B., Rennert, Gad, Moreno, Victor, Ulrich, Cornelia M., Woods, Michael O., Green, Roger C., Parfrey, Patrick S., Prentice, Ross L., Kooperberg, Charles, Jackson, Rebecca D., LaCroix, Andrea Z., Caan, Bette J., Hayes, Richard B., Berndt, Sonja I., Chanock, Stephen J., Schoen, Robert E., Chang-Claude, Jenny, Hoffmeister, Michael, Brenner, Hermann, Frank, Bernd, Bézieau, Stéphane, Küry, Sébastien, Slattery, Martha L., Hopper, John L., Jenkins, Mark A., Le Marchand, Loic, Lindor, Noralane M., Newcomb, Polly A., Seminara, Daniela, Hudson, Thomas J., Duggan, David J., Potter, John D., Casey, Graham
Published in Human genetics (01.02.2012)
Published in Human genetics (01.02.2012)
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MLH1 region polymorphisms show a significant association with CpG island shore methylation in a large cohort of healthy individuals
Savio, Andrea J, Lemire, Mathieu, Mrkonjic, Miralem, Gallinger, Steven, Zanke, Brent W, Hudson, Thomas J, Bapat, Bharati
Published in PloS one (11.12.2012)
Published in PloS one (11.12.2012)
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REPLY TO VICKERS: Pharmacogenetics and progression to neovascular age-related macular degeneration–Evidence supporting practice change
Vavvas, Demetrios G., Bάββας, Δημήτριο̨ς Γ., Small, Kent W., Awh, Carl, Zanke, Brent W., Tibshirani, Robert J., Kustra, Rafal
Published in Proceedings of the National Academy of Sciences - PNAS (19.06.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (19.06.2018)
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Enrichment of colorectal cancer associations in functional regions: Insight for using epigenomics data in the analysis of whole genome sequence-imputed GWAS data
Bien, Stephanie A, Auer, Paul L, Harrison, Tabitha A, Qu, Conghui, Connolly, Charles M, Greenside, Peyton G, Chen, Sai, Berndt, Sonja I, Bézieau, Stéphane, Kang, Hyun M, Huyghe, Jeroen, Brenner, Hermann, Casey, Graham, Chan, Andrew T, Hopper, John L, Banbury, Barbara L, Chang-Claude, Jenny, Chanock, Stephen J, Haile, Robert W, Hoffmeister, Michael, Fuchsberger, Christian, Jenkins, Mark A, Leal, Suzanne M, Lemire, Mathieu, Newcomb, Polly A, Gallinger, Steven, Potter, John D, Schoen, Robert E, Slattery, Martha L, Smith, Joshua D, Le Marchand, Loic, White, Emily, Zanke, Brent W, Abeçasis, Goncalo R, Carlson, Christopher S, Peters, Ulrike, Nickerson, Deborah A, Kundaje, Anshul, Hsu, Li
Published in PloS one (21.11.2017)
Published in PloS one (21.11.2017)
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The effect of 5-fluorouracil/leucovorin chemotherapy on CpG methylation, or the confounding role of leukocyte heterogeneity: An illustration
Lemire, Mathieu, Zaidi, Syed H.E., Zanke, Brent W., Gallinger, Steven, Hudson, Thomas J., Cleary, Sean P.
Published in Genomics (San Diego, Calif.) (01.12.2015)
Published in Genomics (San Diego, Calif.) (01.12.2015)
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Principal component of explained variance: An efficient and optimal data dimension reduction framework for association studies
Turgeon, Maxime, Oualkacha, Karim, Ciampi, Antonio, Miftah, Hanane, Dehghan, Golsa, Zanke, Brent W, Benedet, Andréa L, Rosa-Neto, Pedro, Greenwood, Celia Mt, Labbe, Aurélie
Published in Statistical methods in medical research (01.05.2018)
Published in Statistical methods in medical research (01.05.2018)
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Identification of genes expressed by immune cells of the colon that are regulated by colorectal cancer‐associated variants
Peltekova, Vanya D., Lemire, Mathieu, Qazi, Aamer M., Zaidi, Syed H. E., Trinh, Quang M., Bielecki, Ryszard, Rogers, Marianne, Hodgson, Lyndsey, Wang, Mike, D'Souza, David J. A., Zandi, Sasan, Chong, Taryne, Kwan, Jennifer Y. Y., Kozak, Krystian, Borja, Richard, Timms, Lee, Rangrej, Jagadish, Volar, Milica, Chan‐Seng‐Yue, Michelle, Beck, Timothy, Ash, Colleen, Lee, Shawna, Wang, Jianxin, Boutros, Paul C., Stein, Lincoln D., Dick, John E., Gryfe, Robert, McPherson, John D., Zanke, Brent W., Pollett, Aaron, Gallinger, Steven, Hudson, Thomas J.
Published in International journal of cancer (15.05.2014)
Published in International journal of cancer (15.05.2014)
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Predictive Models for Breast Cancer Susceptibility from Multiple Single Nucleotide Polymorphisms
LISTGARTEN, Jennifer, DAMARAJU, Sambasivarao, POULIN, Brett, COOK, Lillian, DUFOUR, Jennifer, DRIGA, Adrian, MACKEY, John, WISHART, David, GREINER, Russ, ZANKE, Brent
Published in Clinical cancer research (15.04.2004)
Published in Clinical cancer research (15.04.2004)
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Pleiotropic effects of genetic risk variants for other cancers on colorectal cancer risk: PAGE, GECCO and CCFR consortia
Cheng, Iona, Kocarnik, Jonathan M, Dumitrescu, Logan, Lindor, Noralane M, Chang-Claude, Jenny, Avery, Christy L, Caberto, Christian P, Love, Shelly-Ann, Slattery, Martha L, Chan, Andrew T, Baron, John A, Hindorff, Lucia A, Park, Sungshim Lani, Schumacher, Fredrick R, Hoffmeister, Michael, Kraft, Peter, Butler, Anne M, Duggan, David J, Hou, Lifang, Carlson, Chris S, Monroe, Kristine R, Lin, Yi, Carty, Cara L, Mann, Sue, Ma, Jing, Giovannucci, Edward L, Fuchs, Charles S, Newcomb, Polly A, Jenkins, Mark A, Hopper, John L, Haile, Robert W, Conti, David V, Campbell, Peter T, Potter, John D, Caan, Bette J, Schoen, Robert E, Hayes, Richard B, Chanock, Stephen J, Berndt, Sonja I, Küry, Sebastien, Bézieau, Stephane, Ambite, Jose Luis, Kumaraguruparan, Gowri, Richardson, Danielle M, Goodloe, Robert J, Dilks, Holli H, Baker, Paxton, Zanke, Brent W, Lemire, Mathieu, Gallinger, Steven, Hsu, Li, Jiao, Shuo, Harrison, Tabitha A, Seminara, Daniela, Haiman, Christopher A, Kooperberg, Charles, Wilkens, Lynne R, Hutter, Carolyn M, White, Emily, Crawford, Dana C, Heiss, Gerardo, Hudson, Thomas J, Brenner, Hermann, Bush, William S, Casey, Graham, Le Marchand, Loïc, Peters, Ulrike
Published in Gut (01.05.2014)
Published in Gut (01.05.2014)
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Specific variants in the MLH1 gene region may drive DNA methylation, loss of protein expression, and MSI-H colorectal cancer
Mrkonjic, Miralem, Roslin, Nicole M, Greenwood, Celia M, Raptis, Stavroula, Pollett, Aaron, Laird, Peter W, Pethe, Vaijayanti V, Chiang, Theodore, Daftary, Darshana, Dicks, Elizabeth, Thibodeau, Stephen N, Gallinger, Steven, Parfrey, Patrick S, Younghusband, H Banfield, Potter, John D, Hudson, Thomas J, McLaughlin, John R, Green, Roger C, Zanke, Brent W, Newcomb, Polly A, Paterson, Andrew D, Bapat, Bharati
Published in PloS one (13.10.2010)
Published in PloS one (13.10.2010)
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