A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees
Shakya, Migun, Gottel, Neil, Castro, Hector, Yang, Zamin K, Gunter, Lee, Labbé, Jessy, Muchero, Wellington, Bonito, Gregory, Vilgalys, Rytas, Tuskan, Gerald, Podar, Mircea, Schadt, Christopher W
Published in PloS one (16.10.2013)
Published in PloS one (16.10.2013)
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Journal Article
Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing
Griffen, Ann L, Beall, Clifford J, Campbell, James H, Firestone, Noah D, Kumar, Purnima S, Yang, Zamin K, Podar, Mircea, Leys, Eugene J
Published in The ISME Journal (01.06.2012)
Published in The ISME Journal (01.06.2012)
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Journal Article
Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities
Shakya, Migun, Quince, Christopher, Campbell, James H., Yang, Zamin K., Schadt, Christopher W., Podar, Mircea
Published in Environmental microbiology (01.06.2013)
Published in Environmental microbiology (01.06.2013)
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Journal Article
Microbial community structure of hydrothermal deposits from geochemically different vent fields along the Mid-Atlantic Ridge
Flores, Gilberto E., Campbell, James H., Kirshtein, Julie D., Meneghin, Jennifer, Podar, Mircea, Steinberg, Joshua I., Seewald, Jeffrey S., Tivey, Margaret Kingston, Voytek, Mary A., Yang, Zamin K., Reysenbach, Anna-Louise
Published in Environmental microbiology (01.08.2011)
Published in Environmental microbiology (01.08.2011)
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Journal Article
Host genetic and environmental effects on mouse intestinal microbiota
Campbell, James H, Foster, Carmen M, Vishnivetskaya, Tatiana, Campbell, Alisha G, Yang, Zamin K, Wymore, Ann, Palumbo, Anthony V, Chesler, Elissa J, Podar, Mircea
Published in The ISME Journal (01.11.2012)
Published in The ISME Journal (01.11.2012)
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Journal Article
Rhizosphere microbiomes diverge among Populus trichocarpa plant-host genotypes and chemotypes, but it depends on soil origin
Veach, Allison M, Morris, Reese, Yip, Daniel Z, Yang, Zamin K, Engle, Nancy L, Cregger, Melissa A, Tschaplinski, Timothy J, Schadt, Christopher W
Published in Microbiome (18.05.2019)
Published in Microbiome (18.05.2019)
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Journal Article
Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress
Yang, Shihui, Giannone, Richard J, Dice, Lezlee, Yang, Zamin K, Engle, Nancy L, Tschaplinski, Timothy J, Hettich, Robert L, Brown, Steven D
Published in BMC genomics (23.07.2012)
Published in BMC genomics (23.07.2012)
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Journal Article
Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis
Utturkar, Sagar M, Cude, W Nathan, Robeson, Jr, Michael S, Yang, Zamin K, Klingeman, Dawn M, Land, Miriam L, Allman, Steve L, Lu, Tse-Yuan S, Brown, Steven D, Schadt, Christopher W, Podar, Mircea, Doktycz, Mitchel J, Pelletier, Dale A
Published in Applied and environmental microbiology (15.09.2016)
Published in Applied and environmental microbiology (15.09.2016)
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Journal Article
Mercury and Other Heavy Metals Influence Bacterial Community Structure in Contaminated Tennessee Streams
Vishnivetskaya, Tatiana A, Mosher, Jennifer J, Palumbo, Anthony V, Yang, Zamin K, Podar, Mircea, Brown, Steven D, Brooks, Scott C, Gu, Baohua, Southworth, George R, Drake, Meghan M, Brandt, Craig C, Elias, Dwayne A
Published in Applied and Environmental Microbiology (01.01.2011)
Published in Applied and Environmental Microbiology (01.01.2011)
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Journal Article
Physiological roles of ArcA, Crp, and EtrA and their interactive control on aerobic and anaerobic respiration in Shewanella oneidensis
Gao, Haichun, Wang, Xiaohu, Yang, Zamin K, Chen, Jingrong, Liang, Yili, Chen, Haijiang, Palzkill, Timothy, Zhou, Jizhong
Published in PloS one (28.12.2010)
Published in PloS one (28.12.2010)
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Journal Article
Distinct Microbial Communities within the Endosphere and Rhizosphere of Populus deltoides Roots across Contrasting Soil Types
GOTTEL, Neil R, CASTRO, Hector F, DOKTYCZ, Mitchel J, SCHADT, Christopher W, KERLEY, Marilyn, ZAMIN YANG, PELLETIER, Dale A, PODAR, Mircea, KARPINETS, Tatiana, UBERBACHER, Ed, TUSKAN, Gerald A, VILGALYS, Rytas
Published in Applied and Environmental Microbiology (01.09.2011)
Published in Applied and Environmental Microbiology (01.09.2011)
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Journal Article
One-time nitrogen fertilization shifts switchgrass soil microbiomes within a context of larger spatial and temporal variation
Chen, Huaihai, Yang, Zamin K, Yip, Dan, Morris, Reese H, Lebreux, Steven J, Cregger, Melissa A, Klingeman, Dawn M, Hui, Dafeng, Hettich, Robert L, Wilhelm, Steven W, Wang, Gangsheng, Löffler, Frank E, Schadt, Christopher W
Published in PloS one (18.06.2019)
Published in PloS one (18.06.2019)
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Journal Article
Probing regulon of ArcA in Shewanella oneidensis MR-1 by integrated genomic analyses
Gao, Haichun, Wang, Xiaohu, Yang, Zamin K, Palzkill, Timothy, Zhou, Jizhong
Published in BMC genomics (25.01.2008)
Published in BMC genomics (25.01.2008)
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Journal Article
Development of a clostridia-based cell-free system for prototyping genetic parts and metabolic pathways
Krüger, Antje, Mueller, Alexander P., Rybnicky, Grant A., Engle, Nancy L., Yang, Zamin K., Tschaplinski, Timothy J., Simpson, Sean D., Köpke, Michael, Jewett, Michael C.
Published in Metabolic engineering (01.11.2020)
Published in Metabolic engineering (01.11.2020)
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Journal Article
Hexavalent chromium reduction under fermentative conditions with lactate stimulated native microbial communities
Somenahally, Anil C, Mosher, Jennifer J, Yuan, Tong, Podar, Mircea, Phelps, Tommy J, Brown, Steven D, Yang, Zamin K, Hazen, Terry C, Arkin, Adam P, Palumbo, Anthony V, Van Nostrand, Joy D, Zhou, Jizhong, Elias, Dwayne A
Published in PloS one (23.12.2013)
Published in PloS one (23.12.2013)
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Journal Article
Reduction of nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA
Gao, Haichun, Yang, Zamin K, Barua, Soumitra, Reed, Samantha B, Romine, Margaret F, Nealson, Kenneth H, Fredrickson, James K, Tiedje, James M, Zhou, Jizhong
Published in The ISME Journal (01.08.2009)
Published in The ISME Journal (01.08.2009)
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Journal Article
The Electron Transfer System of Syntrophically Grown Desulfovibrio vulgaris
Walker, Christopher B, He, Zhili, Yang, Zamin K, Ringbauer, Jr, Joseph A, He, Qiang, Zhou, Jizhong, Voordouw, Gerrit, Wall, Judy D, Arkin, Adam P, Hazen, Terry C, Stolyar, Sergey, Stahl, David A
Published in Journal of Bacteriology (01.09.2009)
Published in Journal of Bacteriology (01.09.2009)
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