Accurate, scalable cohort variant calls using DeepVariant and GLnexus
Yun, Taedong, Li, Helen, Chang, Pi-Chuan, Lin, Michael F, Carroll, Andrew, McLean, Cory Y
Published in Bioinformatics (05.04.2021)
Published in Bioinformatics (05.04.2021)
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Journal Article
DeepNull models non-linear covariate effects to improve phenotypic prediction and association power
McCaw, Zachary R, Colthurst, Thomas, Yun, Taedong, Furlotte, Nicholas A, Carroll, Andrew, Alipanahi, Babak, McLean, Cory Y, Hormozdiari, Farhad
Published in Nature communications (11.01.2022)
Published in Nature communications (11.01.2022)
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Journal Article
Improving variant calling using population data and deep learning
Chen, Nae-Chyun, Kolesnikov, Alexey, Goel, Sidharth, Yun, Taedong, Chang, Pi-Chuan, Carroll, Andrew
Published in BMC bioinformatics (12.05.2023)
Published in BMC bioinformatics (12.05.2023)
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Journal Article
Balanced labellings of affine permutations
Yoo, Hwanchul, Yun, Taedong
Published in Discrete Mathematics and Theoretical Computer Science (01.01.2013)
Published in Discrete Mathematics and Theoretical Computer Science (01.01.2013)
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Journal Article
Conference Proceeding
DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer
Baid, Gunjan, Cook, Daniel E, Shafin, Kishwar, Yun, Taedong, Llinares-López, Felipe, Berthet, Quentin, Belyaeva, Anastasiya, Töpfer, Armin, Wenger, Aaron M, Rowell, William J, Yang, Howard, Kolesnikov, Alexey, Ammar, Waleed, Vert, Jean-Philippe, Vaswani, Ashish, McLean, Cory Y, Nattestad, Maria, Chang, Pi-Chuan, Carroll, Andrew
Published in Nature biotechnology (01.02.2023)
Published in Nature biotechnology (01.02.2023)
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Journal Article
Unsupervised representation learning on high-dimensional clinical data improves genomic discovery and prediction
Yun, Taedong, Cosentino, Justin, Behsaz, Babak, McCaw, Zachary R., Hill, Davin, Luben, Robert, Lai, Dongbing, Bates, John, Yang, Howard, Schwantes-An, Tae-Hwi, Zhou, Yuchen, Khawaja, Anthony P., Carroll, Andrew, Hobbs, Brian D., Cho, Michael H., McLean, Cory Y., Hormozdiari, Farhad
Published in Nature genetics (01.08.2024)
Published in Nature genetics (01.08.2024)
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Journal Article
Rainbow Graphs and Switching Classes
Oh, Suho, Yoo, Hwanchul, Yun, Taedong
Published in SIAM journal on discrete mathematics (01.01.2013)
Published in SIAM journal on discrete mathematics (01.01.2013)
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Journal Article
A population-specific reference panel for improved genotype imputation in African Americans
O'Connell, Jared, Yun, Taedong, Moreno, Meghan, Li, Helen, Litterman, Nadia, Kolesnikov, Alexey, Noblin, Elizabeth, Chang, Pi-Chuan, Shastri, Anjali, Dorfman, Elizabeth H, Shringarpure, Suyash, Auton, Adam, Carroll, Andrew, McLean, Cory Y
Published in Communications biology (05.11.2021)
Published in Communications biology (05.11.2021)
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Journal Article
SLOE: A Faster Method for Statistical Inference in High-Dimensional Logistic Regression
Yadlowsky, Steve, Yun, Taedong, McLean, Cory, D'Amour, Alexander
Published in arXiv.org (25.05.2021)
Published in arXiv.org (25.05.2021)
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Journal Article
Utilizing multimodal AI to improve genetic analyses of cardiovascular traits
Zhou, Yuchen, Cosentino, Justin, Yun, Taedong, Biradar, Mahantesh I, Shreibati, Jacqueline, Lai, Dongbing, Schwantes-An, Tae-Hwi, Luben, Robert, McCaw, Zachary, Engmann, Jorgen, Providencia, Rui, Schmidt, Amand Floriaan, Munroe, Patricia, Yang, Howard, Carroll, Andrew, Khawaja, Anthony P, McLean, Cory Y, Behsaz, Babak, Hormozdiari, Farhad
Published in medRxiv : the preprint server for health sciences (20.03.2024)
Published in medRxiv : the preprint server for health sciences (20.03.2024)
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Journal Article
Diagrams of affine permutations, balanced labellings, and symmetric functions
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Journal Article
REPRESENTATION LEARNING MODELS FOR IMPROVED GENOMICS
COSENTINO, Justin, BEHSAZ, Babak, HORMOZDIARI, Farhad, CARROLL, Andrew, YUN, Taedong, MCLEAN, Cory
Year of Publication 14.03.2024
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Year of Publication 14.03.2024
Patent
Unsupervised representation learning improves genomic discovery for lung function and respiratory disease prediction
Yun, Taedong, Cosentino, Justin, Behsaz, Babak, McCaw, Zachary R, Hill, Davin, Luben, Robert, Lai, Dongbing, Bates, John, Yang, Howard, Schwantes-An, Tae-Hwi, Khawaja, Anthony P, Carroll, Andrew, Hobbs, Brian D, Cho, Michael H, McLean, Cory Y, Hormozdiari, Farhad
Published in medRxiv : the preprint server for health sciences (29.04.2023)
Published in medRxiv : the preprint server for health sciences (29.04.2023)
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Journal Article
Deep Learning Utilizing Suboptimal Spirometry Data to Improve Lung Function and Mortality Prediction in the UK Biobank
Hill, Davin, Torop, Max, Masoomi, Aria, Castaldi, Peter J, Silverman, Edwin K, Bodduluri, Sandeep, Bhatt, Surya P, Yun, Taedong, McLean, Cory Y, Hormozdiari, Farhad, Dy, Jennifer, Cho, Michael H, Hobbs, Brian D
Published in medRxiv : the preprint server for health sciences (29.04.2023)
Published in medRxiv : the preprint server for health sciences (29.04.2023)
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Journal Article
SEQUENCE ERROR CORRECTION USING NEURAL NETWORKS
COOK, Daniel Elwood, LLINARES LÓPEZ, Felipe, VASWANI, Ashish Teku, BAID, Gunjan, MCLEAN, Cory Yuen Fu, SHAFIN, MD Kishwar, NATTESTAD, Maria, BERTHET, Quentin Didier Olivier, YUN, Taedong, CARROLL, Andrew Walker, CHANG, Pi-Chuan, VERT, Jean-Philippe
Year of Publication 01.05.2024
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Year of Publication 01.05.2024
Patent
Improving variant calling using population data and deep learning
Chen, Nae-Chyun, Kolesnikov, Alexey, Goel, Sidharth, Yun, Taedong, Pi-Chuan Chang, Carroll, Andrew
Published in bioRxiv (07.01.2021)
Published in bioRxiv (07.01.2021)
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Paper
Underspecification Presents Challenges for Credibility in Modern Machine Learning
D'Amour, Alexander, Heller, Katherine, Moldovan, Dan, Adlam, Ben, Alipanahi, Babak, Beutel, Alex, Chen, Christina, Deaton, Jonathan, Eisenstein, Jacob, Hoffman, Matthew D, Hormozdiari, Farhad, Houlsby, Neil, Hou, Shaobo, Jerfel, Ghassen, Karthikesalingam, Alan, Lucic, Mario, Ma, Yian, McLean, Cory, Mincu, Diana, Mitani, Akinori, Montanari, Andrea, Nado, Zachary, Natarajan, Vivek, Nielson, Christopher, Osborne, Thomas F, Raman, Rajiv, Ramasamy, Kim, Sayres, Rory, Schrouff, Jessica, Seneviratne, Martin, Sequeira, Shannon, Suresh, Harini, Veitch, Victor, Vladymyrov, Max, Wang, Xuezhi, Webster, Kellie, Yadlowsky, Steve, Yun, Taedong, Zhai, Xiaohua, Sculley, D
Published in arXiv.org (24.11.2020)
Published in arXiv.org (24.11.2020)
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