Compartmentalized microbes and co-cultures in hydrogels for on-demand bioproduction and preservation
Johnston, Trevor G., Yuan, Shuo-Fu, Wagner, James M., Yi, Xiunan, Saha, Abhijit, Smith, Patrick, Nelson, Alshakim, Alper, Hal S.
Published in Nature communications (04.02.2020)
Published in Nature communications (04.02.2020)
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Journal Article
Additive Manufacturing of Engineered Living Materials with Bio‐Augmented Mechanical Properties and Resistance to Degradation
Altin‐Yavuzarslan, Gokce, Brooks, Sierra M., Yuan, Shuo‐Fu, Park, James O., Alper, Hal S., Nelson, Alshakim
Published in Advanced functional materials (12.06.2023)
Published in Advanced functional materials (12.06.2023)
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Journal Article
RNA-aptamers-in-droplets (RAPID) high-throughput screening for secretory phenotypes
Abatemarco, Joseph, Sarhan, Maen F., Wagner, James M., Lin, Jyun-Liang, Liu, Leqian, Hassouneh, Wafa, Yuan, Shuo-Fu, Alper, Hal S., Abate, Adam R.
Published in Nature communications (23.08.2017)
Published in Nature communications (23.08.2017)
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Journal Article
Enhancing long‐term storage and stability of engineered living materials through desiccant storage and trehalose treatment
Brooks, Sierra M., Reed, Kevin B., Yuan, Shuo‐Fu, Altin‐Yavuzarslan, Gokce, Shafranek, Ryan, Nelson, Alshakim, Alper, Hal S.
Published in Biotechnology and bioengineering (01.02.2023)
Published in Biotechnology and bioengineering (01.02.2023)
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Journal Article
A tripartite microbial co-culture system for de novo biosynthesis of diverse plant phenylpropanoids
Brooks, Sierra M., Marsan, Celeste, Reed, Kevin B., Yuan, Shuo-Fu, Nguyen, Dustin-Dat, Trivedi, Adit, Altin-Yavuzarslan, Gokce, Ballinger, Nathan, Nelson, Alshakim, Alper, Hal S.
Published in Nature communications (24.07.2023)
Published in Nature communications (24.07.2023)
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Journal Article
Biochemical Characterization and Structural Analysis of a Bifunctional Cellulase/Xylanase from Clostridium thermocellum
Yuan, Shuo-Fu, Wu, Tzu-Hui, Lee, Hsiao-Lin, Hsieh, Han-Yu, Lin, Wen-Ling, Yang, Barbara, Chang, Chih-Kang, Li, Qian, Gao, Jian, Huang, Chun-Hsiang, Ho, Meng-Chiao, Guo, Rey-Ting, Liang, Po-Huang
Published in The Journal of biological chemistry (27.02.2015)
Published in The Journal of biological chemistry (27.02.2015)
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Journal Article
Production of optically pure l(+)-lactic acid from waste plywood chips using an isolated thermotolerant Enterococcus faecalis SI at a pilot scale
Yuan, Shuo-Fu, Hsu, Teng-Chieh, Wang, Chun-An, Jang, Ming-Feng, Kuo, Yang-Cheng, Alper, Hal S., Guo, Gia-Luen, Hwang, Wen-Song
Published in Journal of industrial microbiology & biotechnology (01.11.2018)
Published in Journal of industrial microbiology & biotechnology (01.11.2018)
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Journal Article
Gene expression dynamics in input-responsive engineered living materials programmed for bioproduction
Sugianto, Widianti, Altin-Yavuzarslan, Gokce, Tickman, Benjamin I., Kiattisewee, Cholpisit, Yuan, Shuo-Fu, Brooks, Sierra M., Wong, Jitkanya, Alper, Hal S., Nelson, Alshakim, Carothers, James M.
Published in Materials today bio (01.06.2023)
Published in Materials today bio (01.06.2023)
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Journal Article
Bioproduced Proteins On Demand (Bio-POD) in hydrogels using Pichia pastoris
Yuan, Shuo-Fu, Brooks, Sierra M., Nguyen, Annalee W., Lin, Wen-Ling, Johnston, Trevor G., Maynard, Jennifer A., Nelson, Alshakim, Alper, Hal S.
Published in Bioactive materials (01.08.2021)
Published in Bioactive materials (01.08.2021)
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Journal Article
Development of a growth coupled and multi-layered dynamic regulation network balancing malonyl-CoA node to enhance (2S)-naringenin biosynthesis in Escherichia coli
Zhou, Shenghu, Yuan, Shuo-Fu, Nair, Priya H., Alper, Hal S., Deng, Yu, Zhou, Jingwen
Published in Metabolic engineering (01.09.2021)
Published in Metabolic engineering (01.09.2021)
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Journal Article
A comparative analysis of single cell and droplet-based FACS for improving production phenotypes: Riboflavin overproduction in Yarrowia lipolytica
Wagner, James M., Liu, Leqian, Yuan, Shuo-Fu, Venkataraman, Maya V., Abate, Adam R., Alper, Hal S.
Published in Metabolic engineering (01.05.2018)
Published in Metabolic engineering (01.05.2018)
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Journal Article
Production of optically pure l-lactic acid from lignocellulosic hydrolysate by using a newly isolated and d-lactate dehydrogenase gene-deficient Lactobacillus paracasei strain
Kuo, Yang-Cheng, Yuan, Shuo-Fu, Wang, Chun-An, Huang, Yin-Jung, Guo, Gia-Luen, Hwang, Wen-Song
Published in Bioresource technology (01.12.2015)
Published in Bioresource technology (01.12.2015)
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Journal Article
Sorting for secreted molecule production using a biosensor-in-microdroplet approach
Bowman, Emily K., Wagner, James M., Yuan, Shuo-Fu, Deaner, Matthew, Palmer, Claire M., D’Oelsnitz, Simon, Cordova, Lauren, Li, Xin, Craig, Frank F., Alper, Hal S.
Published in Proceedings of the National Academy of Sciences - PNAS (07.09.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (07.09.2021)
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Journal Article
A flexible loop for mannan recognition and activity enhancement in a bifunctional glycoside hydrolase family 5
Liang, Po-Huang, Lin, Wen-Ling, Hsieh, Han-Yu, Lin, Tsung-Yi, Chen, Chun-Hsu, Tewary, Sunil K., Lee, Hsiao-Lin, Yuan, Shuo-Fu, Yang, Barbara, Yao, Jyun-Yu, Ho, Meng-Chiao
Published in Biochimica et biophysica acta. General subjects (01.03.2018)
Published in Biochimica et biophysica acta. General subjects (01.03.2018)
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