Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids
Gu, Wei, Deng, Xianding, Lee, Marco, Sucu, Yasemin D., Arevalo, Shaun, Stryke, Doug, Federman, Scot, Gopez, Allan, Reyes, Kevin, Zorn, Kelsey, Sample, Hannah, Yu, Guixia, Ishpuniani, Gurpreet, Briggs, Benjamin, Chow, Eric D., Berger, Amy, Wilson, Michael R., Wang, Candace, Hsu, Elaine, Miller, Steve, DeRisi, Joseph L., Chiu, Charles Y.
Published in Nature medicine (01.01.2021)
Published in Nature medicine (01.01.2021)
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Journal Article
CRISPR–Cas12-based detection of SARS-CoV-2
Broughton, James P., Deng, Xianding, Yu, Guixia, Fasching, Clare L., Servellita, Venice, Singh, Jasmeet, Miao, Xin, Streithorst, Jessica A., Granados, Andrea, Sotomayor-Gonzalez, Alicia, Zorn, Kelsey, Gopez, Allan, Hsu, Elaine, Gu, Wei, Miller, Steve, Pan, Chao-Yang, Guevara, Hugo, Wadford, Debra A., Chen, Janice S., Chiu, Charles Y.
Published in Nature Biotechnology (01.07.2020)
Published in Nature Biotechnology (01.07.2020)
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Actionable Diagnosis of Neuroleptospirosis by Next-Generation Sequencing
Wilson, Michael R, Naccache, Samia N, Samayoa, Erik, Biagtan, Mark, Bashir, Hiba, Yu, Guixia, Salamat, Shahriar M, Somasekar, Sneha, Federman, Scot, Miller, Steve, Sokolic, Robert, Garabedian, Elizabeth, Candotti, Fabio, Buckley, Rebecca H, Reed, Kurt D, Meyer, Teresa L, Seroogy, Christine M, Galloway, Renee, Henderson, Sheryl L, Gern, James E, DeRisi, Joseph L, Chiu, Charles Y
Published in The New England journal of medicine (19.06.2014)
Published in The New England journal of medicine (19.06.2014)
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Journal Article
A mouse model of paralytic myelitis caused by enterovirus D68
Hixon, Alison M, Yu, Guixia, Leser, J Smith, Yagi, Shigeo, Clarke, Penny, Chiu, Charles Y, Tyler, Kenneth L
Published in PLoS pathogens (01.02.2017)
Published in PLoS pathogens (01.02.2017)
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Journal Article
Nanopore DNA Sequencing and Genome Assembly on the International Space Station
Castro-Wallace, Sarah L., Chiu, Charles Y., John, Kristen K., Stahl, Sarah E., Rubins, Kathleen H., McIntyre, Alexa B. R., Dworkin, Jason P., Lupisella, Mark L., Smith, David J., Botkin, Douglas J., Stephenson, Timothy A., Juul, Sissel, Turner, Daniel J., Izquierdo, Fernando, Federman, Scot, Stryke, Doug, Somasekar, Sneha, Alexander, Noah, Yu, Guixia, Mason, Christopher E., Burton, Aaron S.
Published in Scientific reports (21.12.2017)
Published in Scientific reports (21.12.2017)
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A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the USA (2012–14): a retrospective cohort study
Greninger, Alexander L, MD, Naccache, Samia N, PhD, Messacar, Kevin, MD, Clayton, Anna, BSc, Yu, Guixia, BSc, Somasekar, Sneha, BSc, Federman, Scot, BA, Stryke, Doug, BSc, Anderson, Christopher, BSc, Yagi, Shigeo, PhD, Messenger, Sharon, PhD, Wadford, Debra, PhD, Xia, Dongxiang, MD, Watt, James P, MD, Van Haren, Keith, MD, Dominguez, Samuel R, MD, Glaser, Carol, MD, Aldrovandi, Grace, Prof, Chiu, Charles Y, Dr
Published in The Lancet infectious diseases (01.06.2015)
Published in The Lancet infectious diseases (01.06.2015)
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Journal Article
Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
Greninger, Alexander L, Naccache, Samia N, Federman, Scot, Yu, Guixia, Mbala, Placide, Bres, Vanessa, Stryke, Doug, Bouquet, Jerome, Somasekar, Sneha, Linnen, Jeffrey M, Dodd, Roger, Mulembakani, Prime, Schneider, Bradley S, Muyembe-Tamfum, Jean-Jacques, Stramer, Susan L, Chiu, Charles Y
Published in Genome medicine (29.09.2015)
Published in Genome medicine (29.09.2015)
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Journal Article
Experimental Zika Virus Inoculation in a New World Monkey Model Reproduces Key Features of the Human Infection
Chiu, Charles Y., Sánchez-San Martín, Claudia, Bouquet, Jerome, Li, Tony, Yagi, Shigeo, Tamhankar, Manasi, Hodara, Vida L., Parodi, Laura M., Somasekar, Sneha, Yu, Guixia, Giavedoni, Luis D., Tardif, Suzette, Patterson, Jean
Published in Scientific reports (07.12.2017)
Published in Scientific reports (07.12.2017)
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Journal Article
Idiopathic pneumonia syndrome after hematopoietic cell transplantation: evidence of occult infectious etiologies
Seo, Sachiko, Renaud, Christian, Kuypers, Jane M., Chiu, Charles Y., Huang, Meei-Li, Samayoa, Erik, Xie, Hu, Yu, Guixia, Fisher, Cynthia E., Gooley, Ted A., Miller, Steven, Hackman, Robert C., Myerson, David, Sedlak, Ruth H., Kim, Yae-Jean, Fukuda, Takahiro, Fredricks, David N., Madtes, David K., Jerome, Keith R., Boeckh, Michael
Published in Blood (11.06.2015)
Published in Blood (11.06.2015)
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Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico
Thézé, Julien, Li, Tony, du Plessis, Louis, Bouquet, Jerome, Kraemer, Moritz U.G., Somasekar, Sneha, Yu, Guixia, de Cesare, Mariateresa, Balmaseda, Angel, Kuan, Guillermina, Harris, Eva, Wu, Chieh-hsi, Ansari, M. Azim, Bowden, Rory, Faria, Nuno R., Yagi, Shigeo, Messenger, Sharon, Brooks, Trevor, Stone, Mars, Bloch, Evan M., Busch, Michael, Muñoz-Medina, José E., González-Bonilla, Cesar R., Wolinsky, Steven, López, Susana, Arias, Carlos F., Bonsall, David, Chiu, Charles Y., Pybus, Oliver G.
Published in Cell host & microbe (13.06.2018)
Published in Cell host & microbe (13.06.2018)
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Journal Article
Fatal Case of Chronic Jamestown Canyon Virus Encephalitis Diagnosed by Metagenomic Sequencing in Patient Receiving Rituximab
Solomon, Isaac H, Ganesh, Vijay S, Yu, Guixia, Deng, Xian Ding, Wilson, Michael R, Miller, Steve, Milligan, Tracey A, Mukerji, Shibani S, Mathewson, Abigail, Linxweiler, Justin, Morse, Darlene, Ritter, Jana M, Staples, J Erin, Hughes, Holly, Gould, Carolyn V, Sabeti, Pardis C, Chiu, Charles Y, Piantadosi, Anne
Published in Emerging infectious diseases (01.01.2021)
Published in Emerging infectious diseases (01.01.2021)
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Journal Article
Discovery of a novel polyomavirus in acute diarrheal samples from children
Yu, Guixia, Greninger, Alexander L, Isa, Pavel, Phan, Tung G, Martínez, Miguel Angel, de la Luz Sanchez, Maria, Contreras, Juan Francisco, Santos-Preciado, José Ignacio, Parsonnet, Julie, Miller, Steve, DeRisi, Joseph L, Delwart, Eric, Arias, Carlos F, Chiu, Charles Y
Published in PloS one (14.11.2012)
Published in PloS one (14.11.2012)
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A metagenomic analysis of pandemic influenza A (2009 H1N1) infection in patients from North America
Greninger, Alexander L, Chen, Eunice C, Sittler, Taylor, Scheinerman, Alex, Roubinian, Nareg, Yu, Guixia, Kim, Edward, Pillai, Dylan R, Guyard, Cyril, Mazzulli, Tony, Isa, Pavel, Arias, Carlos F, Hackett, John, Schochetman, Gerald, Miller, Steve, Tang, Patrick, Chiu, Charles Y
Published in PloS one (18.10.2010)
Published in PloS one (18.10.2010)
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Journal Article
Genomic Assays for Identification of Chikungunya Virus in Blood Donors, Puerto Rico, 2014
Chiu, Charles Y, Bres, Vanessa, Yu, Guixia, Krysztof, David, Naccache, Samia N, Lee, Deanna, Pfeil, Jacob, Linnen, Jeffrey M, Stramer, Susan L
Published in Emerging infectious diseases (01.08.2015)
Published in Emerging infectious diseases (01.08.2015)
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Journal Article
Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two African Individuals Enrolled in Blood-Borne Surveillance
Orf, Gregory S, Olivo, Ana, Harris, Barbara, Weiss, Sonja L, Achari, Asmeeta, Yu, Guixia, Federman, Scot, Mbanya, Dora, James, Linda, Mampunza, Samuel, Chiu, Charles Y, Rodgers, Mary A, Cloherty, Gavin A, Berg, Michael G
Published in Viruses (01.04.2023)
Published in Viruses (01.04.2023)
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Journal Article
Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome
Yamada, Kayoko, Lim, Jun, Dale, Joseph M., Chen, Huaming, Shinn, Paul, Palm, Curtis J., Southwick, Audrey M., Wu, Hank C., Kim, Christopher, Nguyen, Michelle, Pham, Paul, Cheuk, Rosa, Karlin-Newmann, George, Liu, Shirley X., Lam, Bao, Sakano, Hitomi, Wu, Troy, Yu, Guixia, Miranda, Molly, Quach, Hong L., Tripp, Matthew, Chang, Charlie H., Lee, Jeong M., Toriumi, Mitsue, Marie M. H. Chan, Tang, Carolyn C., Onodera, Courtney S., Deng, Justine M., Akiyama, Kenji, Ansari, Yasser, Arakawa, Takahiro, Banh, Jenny, Banno, Fumika, Bowser, Leah, Brooks, Shelise, Carninci, Piero, Chao, Qimin, Choy, Nathan, Enju, Akiko, Goldsmith, Andrew D., Gurjal, Mani, Hansen, Nancy F., Hayashizaki, Yoshihide, Johnson-Hopson, Chanda, Hsuan, Vickie W., Iida, Kei, Karnes, Meagan, Khan, Shehnaz, Koesema, Eric, Ishida, Junko, Jiang, Paul X., Jones, Ted, Kawai, Jun, Kamiya, Asako, Meyers, Cristina, Nakajima, Maiko, Narusaka, Mari, Seki, Motoaki, Sakurai, Tetsuya, Satou, Masakazu, Tamse, Racquel, Vaysberg, Maria, Wallender, Erika K., Wong, Cecilia, Yamamura, Yuki, Yuan, Shiaulou, Shinozaki, Kazuo, Davis, Ronald W., Theologis, Athanasios, Ecker, Joseph R.
Published in Science (American Association for the Advancement of Science) (31.10.2003)
Published in Science (American Association for the Advancement of Science) (31.10.2003)
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Echinococcus multilocularis Calreticulin Interferes with C1q-Mediated Complement Activation
Xian, Siqi, Chen, Lujuan, Yan, Yan, Chen, Jianfang, Yu, Guixia, Shao, Yuxiao, Zhan, Bin, Wang, Yanhai, Zhao, Limei
Published in Tropical medicine and infectious disease (07.01.2023)
Published in Tropical medicine and infectious disease (07.01.2023)
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Journal Article
A novel adenovirus species associated with an acute respiratory outbreak in a baboon colony and evidence of coincident human infection
Chiu, Charles Y, Yagi, Shigeo, Lu, Xiaoyan, Yu, Guixia, Chen, Eunice C, Liu, Maria, Dick, Jr, Edward J, Carey, Kenneth D, Erdman, Dean D, Leland, Michelle M, Patterson, Jean L
Published in mBio (16.04.2013)
Published in mBio (16.04.2013)
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Journal Article
Experimental cross-species infection of common marmosets by titi monkey adenovirus
Yu, Guixia, Yagi, Shigeo, Carrion, Jr, Ricardo, Chen, Eunice C, Liu, Maria, Brasky, Kathleen M, Lanford, Robert E, Kelly, Kristi R, Bales, Karen L, Schnurr, David P, Canfield, Don R, Patterson, Jean L, Chiu, Charles Y
Published in PloS one (24.07.2013)
Published in PloS one (24.07.2013)
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Journal Article
Author Correction: Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance
Deng, Xianding, Achari, Asmeeta, Federman, Scot, Yu, Guixia, Somasekar, Sneha, Bártolo, Inês, Yagi, Shigeo, Mbala-Kingebeni, Placide, Kapetshi, Jimmy, Ahuka-Mundeke, Steve, Muyembe-Tamfum, Jean-Jacques, Ahmed, Asim A., Ganesh, Vijay, Tamhankar, Manasi, Patterson, Jean L., Ndembi, Nicaise, Mbanya, Dora, Kaptue, Lazare, McArthur, Carole, Muñoz-Medina, José E., Gonzalez-Bonilla, Cesar R., López, Susana, Arias, Carlos F., Arevalo, Shaun, Miller, Steve, Stone, Mars, Busch, Michael, Hsieh, Kristina, Messenger, Sharon, Wadford, Debra A., Rodgers, Mary, Cloherty, Gavin, Faria, Nuno R., Thézé, Julien, Pybus, Oliver G., Neto, Zoraima, Morais, Joana, Taveira, Nuno, Hackett, John R., Chiu, Charles Y.
Published in Nature microbiology (01.03.2020)
Published in Nature microbiology (01.03.2020)
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