Protein inter‐residue contact and distance prediction by coupling complementary coevolution features with deep residual networks in CASP14
Li, Yang, Zhang, Chengxin, Zheng, Wei, Zhou, Xiaogen, Bell, Eric W., Yu, Dong‐Jun, Zhang, Yang
Published in Proteins, structure, function, and bioinformatics (01.12.2021)
Published in Proteins, structure, function, and bioinformatics (01.12.2021)
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Journal Article
TargetCPP: accurate prediction of cell-penetrating peptides from optimized multi-scale features using gradient boost decision tree
Arif, Muhammad, Ahmad, Saeed, Ali, Farman, Fang, Ge, Li, Min, Yu, Dong-Jun
Published in Journal of computer-aided molecular design (01.08.2020)
Published in Journal of computer-aided molecular design (01.08.2020)
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Integrating unsupervised language model with triplet neural networks for protein gene ontology prediction
Zhu, Yi-Heng, Zhang, Chengxin, Yu, Dong-Jun, Zhang, Yang
Published in PLoS computational biology (01.12.2022)
Published in PLoS computational biology (01.12.2022)
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The fundamental performance of FAST with 19-beam receiver at L band
Jiang, Peng, Tang, Ning-Yu, Hou, Li-Gang, Liu, Meng-Ting, Krčo, Marko, Qian, Lei, Sun, Jing-Hai, Ching, Tao-Chung, Liu, Bin, Duan, Yan, Yue, You-Ling, Gan, Heng-Qian, Yao, Rui, Li, Hui, Pan, Gao-Feng, Yu, Dong-Jun, Liu, Hong-Fei, Li, Di, Peng, Bo, Yan, Jun
Published in Research in astronomy and astrophysics (01.05.2020)
Published in Research in astronomy and astrophysics (01.05.2020)
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Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks
Li, Yang, Zhang, Chengxin, Bell, Eric W, Zheng, Wei, Zhou, Xiaogen, Yu, Dong-Jun, Zhang, Yang
Published in PLoS computational biology (01.03.2021)
Published in PLoS computational biology (01.03.2021)
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Journal Article
ASCENT: Active Supervision for Semi-Supervised Learning
Li, Yanchao, Wang, Yongli, Yu, Dong-Jun, Ye, Ning, Hu, Peng, Zhao, Ruxin
Published in IEEE transactions on knowledge and data engineering (01.05.2020)
Published in IEEE transactions on knowledge and data engineering (01.05.2020)
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Journal Article
Prediction of disease-associated nsSNPs by integrating multi-scale ResNet models with deep feature fusion
Ge, Fang, Zhang, Ying, Xu, Jian, Muhammad, Arif, Song, Jiangning, Yu, Dong-Jun
Published in Briefings in bioinformatics (17.01.2022)
Published in Briefings in bioinformatics (17.01.2022)
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Journal Article
Protein–protein interaction sites prediction by ensembling SVM and sample-weighted random forests
Wei, Zhi-Sen, Han, Ke, Yang, Jing-Yu, Shen, Hong-Bin, Yu, Dong-Jun
Published in Neurocomputing (Amsterdam) (12.06.2016)
Published in Neurocomputing (Amsterdam) (12.06.2016)
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Journal Article
DeepCPPred: A Deep Learning Framework for the Discrimination of Cell-Penetrating Peptides and Their Uptake Efficiencies
Arif, Muhammad, Kabir, Muhammad, Ahmed, Saeed, Khan, Abid, Ge, Fang, Khelifi, Adel, Yu, Dong-Jun
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.09.2022)
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.09.2022)
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Journal Article
Sequence‐based Detection of DNA‐binding Proteins using Multiple‐view Features Allied with Feature Selection
Zhou, Liling, Song, Xiaoning, Yu, Dong‐Jun, Sun, Jun
Published in Molecular informatics (01.08.2020)
Published in Molecular informatics (01.08.2020)
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GMFGRN: a matrix factorization and graph neural network approach for gene regulatory network inference
Li, Shuo, Liu, Yan, Shen, Long-Chen, Yan, He, Song, Jiangning, Yu, Dong-Jun
Published in Briefings in bioinformatics (22.01.2024)
Published in Briefings in bioinformatics (22.01.2024)
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Journal Article
Manipulation of photosynthetic energy transfer by vibrational strong coupling
Dong, Jun-Yu, Kitahama, Yasutaka, Fujita, Takatoshi, Adachi, Motoyasu, Shigeta, Yasuteru, Ishizaki, Akihito, Tanaka, Shigenori, Xiao, Ting-Hui, Goda, Keisuke
Published in The Journal of chemical physics (28.01.2024)
Published in The Journal of chemical physics (28.01.2024)
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MINDG: a drug–target interaction prediction method based on an integrated learning algorithm
Yang, Hailong, Chen, Yue, Zuo, Yun, Deng, Zhaohong, Pan, Xiaoyong, Shen, Hong-Bin, Choi, Kup-Sze, Yu, Dong-Jun
Published in Bioinformatics (Oxford, England) (29.03.2024)
Published in Bioinformatics (Oxford, England) (29.03.2024)
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SP-GAN: Self-Growing and Pruning Generative Adversarial Networks
Song, Xiaoning, Chen, Yao, Feng, Zhen-Hua, Hu, Guosheng, Yu, Dong-Jun, Wu, Xiao-Jun
Published in IEEE transaction on neural networks and learning systems (01.06.2021)
Published in IEEE transaction on neural networks and learning systems (01.06.2021)
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