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Bhandari, Vinayak, Hoey, Christianne, Liu, Lydia Y., Lalonde, Emilie, Ray, Jessica, Livingstone, Julie, Lesurf, Robert, Shiah, Yu-Jia, Vujcic, Tina, Huang, Xiaoyong, Espiritu, Shadrielle M. G., Heisler, Lawrence E., Yousif, Fouad, Huang, Vincent, Yamaguchi, Takafumi N., Yao, Cindy Q., Sabelnykova, Veronica Y., Fraser, Michael, Chua, Melvin L. K., van der Kwast, Theodorus, Liu, Stanley K., Boutros, Paul C., Bristow, Robert G.
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Risk SNP-Mediated Promoter-Enhancer Switching Drives Prostate Cancer through lncRNA PCAT19
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Sinha, Ankit, Huang, Vincent, Livingstone, Julie, Wang, Jenny, Fox, Natalie S., Kurganovs, Natalie, Ignatchenko, Vladimir, Fritsch, Katharina, Donmez, Nilgun, Heisler, Lawrence E., Shiah, Yu-Jia, Yao, Cindy Q., Alfaro, Javier A., Volik, Stas, Lapuk, Anna, Fraser, Michael, Kron, Ken, Murison, Alex, Lupien, Mathieu, Sahinalp, Cenk, Collins, Colin C., Tetu, Bernard, Masoomian, Mehdi, Berman, David M., van der Kwast, Theodorus, Bristow, Robert G., Kislinger, Thomas, Boutros, Paul C.
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Targeted proteomics identifies liquid-biopsy signatures for extracapsular prostate cancer
Kim, Yunee, Jeon, Jouhyun, Mejia, Salvador, Yao, Cindy Q, Ignatchenko, Vladimir, Nyalwidhe, Julius O, Gramolini, Anthony O, Lance, Raymond S, Troyer, Dean A, Drake, Richard R, Boutros, Paul C, Semmes, O. John, Kislinger, Thomas
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BPG: Seamless, automated and interactive visualization of scientific data
P'ng, Christine, Green, Jeffrey, Chong, Lauren C, Waggott, Daryl, Prokopec, Stephenie D, Shamsi, Mehrdad, Nguyen, Francis, Mak, Denise Y F, Lam, Felix, Albuquerque, Marco A, Wu, Ying, Jung, Esther H, Starmans, Maud H W, Chan-Seng-Yue, Michelle A, Yao, Cindy Q, Liang, Bianca, Lalonde, Emilie, Haider, Syed, Simone, Nicole A, Sendorek, Dorota, Chu, Kenneth C, Moon, Nathalie C, Fox, Natalie S, Grzadkowski, Michal R, Harding, Nicholas J, Fung, Clement, Murdoch, Amanda R, Houlahan, Kathleen E, Wang, Jianxin, Garcia, David R, de Borja, Richard, Sun, Ren X, Lin, Xihui, Chen, Gregory M, Lu, Aileen, Shiah, Yu-Jia, Zia, Amin, Kearns, Ryan, Boutros, Paul C
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2,3,7,8-Tetrachlorodibenzo-p-dioxin modifies alternative splicing in mouse liver
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Published in PloS one (06.08.2019)
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Computational approaches to support comparative analysis of multiparametric tests: Modelling versus Training
Bartlett, John M. S., Bayani, Jane, Kornaga, Elizabeth N., Danaher, Patrick, Crozier, Cheryl, Piper, Tammy, Yao, Cindy Q., Dunn, Janet A., Boutros, Paul C., Stein, Robert C.
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Deregulation of the spindle assembly checkpoint is associated with paclitaxel resistance in ovarian cancer
Chong, Taryne, Sarac, Amila, Yao, Cindy Q, Liao, Linda, Lyttle, Nicola, Boutros, Paul C, Bartlett, John M S, Spears, Melanie
Published in Journal of ovarian research (04.04.2018)
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Hypoxia promotes stem cell phenotypes and poor prognosis through epigenetic regulation of DICER
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Published in Nature communications (29.10.2014)
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Published in NPJ breast cancer (08.07.2021)
Published in NPJ breast cancer (08.07.2021)
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Modulation of long noncoding RNAs by risk SNPs underlying genetic predispositions to prostate cancer
Guo, Haiyang, Ahmed, Musaddeque, Zhang, Fan, Yao, Cindy Q, Li, SiDe, Liang, Yi, Hua, Junjie, Soares, Fraser, Sun, Yifei, Langstein, Jens, Li, Yuchen, Poon, Christine, Bailey, Swneke D, Desai, Kinjal, Fei, Teng, Li, Qiyuan, Sendorek, Dorota H, Fraser, Michael, Prensner, John R, Pugh, Trevor J, Pomerantz, Mark, Bristow, Robert G, Lupien, Mathieu, Feng, Felix Y, Boutros, Paul C, Freedman, Matthew L, Walsh, Martin J, He, Housheng Hansen
Published in Nature genetics (01.10.2016)
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Molecular stratification of early breast cancer identifies drug targets to drive stratified medicine
Bayani, Jane, Yao, Cindy Q., Quintayo, Mary Anne, Yan, Fu, Haider, Syed, D’Costa, Alister, Brookes, Cassandra L., van de Velde, Cornelis J. H., Hasenburg, Annette, Kieback, Dirk G., Markopoulos, Christos, Dirix, Luc, Seynaeve, Caroline, Rea, Daniel, Boutros, Paul C., Bartlett, John M. S.
Published in NPJ breast cancer (15.02.2017)
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Hypoxia promotes stem cell phenotypes and poor prognosis through epigenetic regulation of DICER
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Published in Nature communications (29.10.2014)
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Tumour genomic and microenvironmental heterogeneity for integrated prediction of 5-year biochemical recurrence of prostate cancer: a retrospective cohort study
Lalonde, Emilie, MSc, Ishkanian, Adrian S, MD, Sykes, Jenna, MMath, Fraser, Michael, PhD, Ross-Adams, Helen, PhD, Erho, Nicholas, MSc, Dunning, Mark J, PhD, Halim, Silvia, MSc, Lamb, Alastair D, FRCS, Moon, Nathalie C, MMath, Zafarana, Gaetano, PhD, Warren, Anne Y, FRCPath, Meng, Xianyue, MSc, Thoms, John, MD, Grzadkowski, Michal R, BMath, Berlin, Alejandro, MD, Have, Cherry L, BSc, Ramnarine, Varune R, BCS, Yao, Cindy Q, MSc, Malloff, Chad A, MSc, Lam, Lucia L, BSc, Xie, Honglei, MMath, Harding, Nicholas J, PhD, Mak, Denise Y F, PhD, Chu, Kenneth C, PhD, Chong, Lauren C, BCS, Sendorek, Dorota H, BSc, P'ng, Christine, BSc, Collins, Colin C, Prof, Squire, Jeremy A, Prof, Jurisica, Igor, Prof, Cooper, Colin, PhD, Eeles, Rosalind, Prof, Pintilie, Melania, MSc, Dal Pra, Alan, MD, Davicioni, Elai, PhD, Lam, Wan L, Prof, Milosevic, Michael, MD, Neal, David E, Prof, van der Kwast, Theodorus, Prof, Boutros, Paul C, Prof, Bristow, Robert G, Prof
Published in The lancet oncology (01.12.2014)
Published in The lancet oncology (01.12.2014)
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Temporal Stability and Prognostic Biomarker Potential of the Prostate Cancer Urine miRNA Transcriptome
Jeon, Jouhyun, Olkhov-Mitsel, Ekaterina, Xie, Honglei, Yao, Cindy Q, Zhao, Fang, Jahangiri, Sahar, Cuizon, Carmelle, Scarcello, Seville, Jeyapala, Renu, Watson, John D, Fraser, Michael, Ray, Jessica, Commisso, Kristina, Loblaw, Andrew, Fleshner, Neil E, Bristow, Robert G, Downes, Michelle, Vesprini, Danny, Liu, Stanley, Bapat, Bharati, Boutros, Paul C
Published in JNCI : Journal of the National Cancer Institute (01.03.2020)
Published in JNCI : Journal of the National Cancer Institute (01.03.2020)
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Genome-wide germline correlates of the epigenetic landscape of prostate cancer
Houlahan, Kathleen E., Shiah, Yu-Jia, Gusev, Alexander, Yuan, Jiapei, Ahmed, Musaddeque, Shetty, Anamay, Ramanand, Susmita G., Yao, Cindy Q., Bell, Connor, O’Connor, Edward, Huang, Vincent, Fraser, Michael, Heisler, Lawrence E., Livingstone, Julie, Yamaguchi, Takafumi N., Rouette, Alexandre, Foucal, Adrien, Espiritu, Shadrielle Melijah G., Sinha, Ankit, Sam, Michelle, Timms, Lee, Johns, Jeremy, Wong, Ada, Murison, Alex, Orain, Michèle, Picard, Valérie, Hovington, Hélène, Bergeron, Alain, Lacombe, Louis, Lupien, Mathieu, Fradet, Yves, Têtu, Bernard, McPherson, John D., Pasaniuc, Bogdan, Kislinger, Thomas, Chua, Melvin L. K., Pomerantz, Mark M., van der Kwast, Theodorus, Freedman, Matthew L., Mani, Ram S., He, Housheng H., Bristow, Robert G., Boutros, Paul C.
Published in Nature medicine (01.10.2019)
Published in Nature medicine (01.10.2019)
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Translating a Prognostic DNA Genomic Classifier into the Clinic: Retrospective Validation in 563 Localized Prostate Tumors
Lalonde, Emilie, Alkallas, Rached, Chua, Melvin Lee Kiang, Fraser, Michael, Haider, Syed, Meng, Alice, Zheng, Junyan, Yao, Cindy Q, Picard, Valerie, Orain, Michele, Hovington, Helène, Murgic, Jure, Berlin, Alejandro, Lacombe, Louis, Bergeron, Alain, Fradet, Yves, Têtu, Bernard, Lindberg, Johan, Egevad, Lars, Grönberg, Henrik, Ross-Adams, Helen, Lamb, Alastair D, Halim, Silvia, Dunning, Mark J, Neal, David E, Pintilie, Melania, van der Kwast, Theodorus, Bristow, Robert G, Boutros, Paul C
Published in European urology (01.07.2017)
Published in European urology (01.07.2017)
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Identification of Differentially Expressed Proteins in Direct Expressed Prostatic Secretions of Men with Organ-confined Versus Extracapsular Prostate Cancer
Kim, Yunee, Ignatchenko, Vladimir, Yao, Cindy Q., Kalatskaya, Irina, Nyalwidhe, Julius O., Lance, Raymond S., Gramolini, Anthony O., Troyer, Dean A., Stein, Lincoln D., Boutros, Paul C., Medin, Jeffrey A., Semmes, O. John, Drake, Richard R., Kislinger, Thomas
Published in Molecular & cellular proteomics (01.12.2012)
Published in Molecular & cellular proteomics (01.12.2012)
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Pathway-based subnetworks enable cross-disease biomarker discovery
Haider, Syed, Yao, Cindy Q., Sabine, Vicky S., Grzadkowski, Michal, Stimper, Vincent, Starmans, Maud H. W., Wang, Jianxin, Nguyen, Francis, Moon, Nathalie C., Lin, Xihui, Drake, Camilla, Crozier, Cheryl A., Brookes, Cassandra L., van de Velde, Cornelis J. H., Hasenburg, Annette, Kieback, Dirk G., Markopoulos, Christos J., Dirix, Luc Y., Seynaeve, Caroline, Rea, Daniel W., Kasprzyk, Arek, Lambin, Philippe, Lio’, Pietro, Bartlett, John M. S., Boutros, Paul C.
Published in Nature communications (12.11.2018)
Published in Nature communications (12.11.2018)
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NanoStringNormCNV: pre-processing of NanoString CNV data
Sendorek, Dorota H, Lalonde, Emilie, Yao, Cindy Q, Sabelnykova, Veronica Y, Bristow, Robert G, Boutros, Paul C
Published in Bioinformatics (15.03.2018)
Published in Bioinformatics (15.03.2018)
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