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Bhandari, Vinayak, Hoey, Christianne, Liu, Lydia Y., Lalonde, Emilie, Ray, Jessica, Livingstone, Julie, Lesurf, Robert, Shiah, Yu-Jia, Vujcic, Tina, Huang, Xiaoyong, Espiritu, Shadrielle M. G., Heisler, Lawrence E., Yousif, Fouad, Huang, Vincent, Yamaguchi, Takafumi N., Yao, Cindy Q., Sabelnykova, Veronica Y., Fraser, Michael, Chua, Melvin L. K., van der Kwast, Theodorus, Liu, Stanley K., Boutros, Paul C., Bristow, Robert G.
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Published in Nature genetics (01.02.2019)
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Risk SNP-Mediated Promoter-Enhancer Switching Drives Prostate Cancer through lncRNA PCAT19
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The Proteogenomic Landscape of Curable Prostate Cancer
Sinha, Ankit, Huang, Vincent, Livingstone, Julie, Wang, Jenny, Fox, Natalie S., Kurganovs, Natalie, Ignatchenko, Vladimir, Fritsch, Katharina, Donmez, Nilgun, Heisler, Lawrence E., Shiah, Yu-Jia, Yao, Cindy Q., Alfaro, Javier A., Volik, Stas, Lapuk, Anna, Fraser, Michael, Kron, Ken, Murison, Alex, Lupien, Mathieu, Sahinalp, Cenk, Collins, Colin C., Tetu, Bernard, Masoomian, Mehdi, Berman, David M., van der Kwast, Theodorus, Bristow, Robert G., Kislinger, Thomas, Boutros, Paul C.
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Modulation of long noncoding RNAs by risk SNPs underlying genetic predispositions to prostate cancer
Guo, Haiyang, Ahmed, Musaddeque, Zhang, Fan, Yao, Cindy Q, Li, SiDe, Liang, Yi, Hua, Junjie, Soares, Fraser, Sun, Yifei, Langstein, Jens, Li, Yuchen, Poon, Christine, Bailey, Swneke D, Desai, Kinjal, Fei, Teng, Li, Qiyuan, Sendorek, Dorota H, Fraser, Michael, Prensner, John R, Pugh, Trevor J, Pomerantz, Mark, Bristow, Robert G, Lupien, Mathieu, Feng, Felix Y, Boutros, Paul C, Freedman, Matthew L, Walsh, Martin J, He, Housheng Hansen
Published in Nature genetics (01.10.2016)
Published in Nature genetics (01.10.2016)
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Targeted proteomics identifies liquid-biopsy signatures for extracapsular prostate cancer
Kim, Yunee, Jeon, Jouhyun, Mejia, Salvador, Yao, Cindy Q, Ignatchenko, Vladimir, Nyalwidhe, Julius O, Gramolini, Anthony O, Lance, Raymond S, Troyer, Dean A, Drake, Richard R, Boutros, Paul C, Semmes, O. John, Kislinger, Thomas
Published in Nature communications (28.06.2016)
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Hypoxia promotes stem cell phenotypes and poor prognosis through epigenetic regulation of DICER
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Published in Nature communications (29.10.2014)
Published in Nature communications (29.10.2014)
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2,3,7,8-Tetrachlorodibenzo-p-dioxin modifies alternative splicing in mouse liver
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Published in PloS one (06.08.2019)
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Tumour genomic and microenvironmental heterogeneity for integrated prediction of 5-year biochemical recurrence of prostate cancer: a retrospective cohort study
Lalonde, Emilie, MSc, Ishkanian, Adrian S, MD, Sykes, Jenna, MMath, Fraser, Michael, PhD, Ross-Adams, Helen, PhD, Erho, Nicholas, MSc, Dunning, Mark J, PhD, Halim, Silvia, MSc, Lamb, Alastair D, FRCS, Moon, Nathalie C, MMath, Zafarana, Gaetano, PhD, Warren, Anne Y, FRCPath, Meng, Xianyue, MSc, Thoms, John, MD, Grzadkowski, Michal R, BMath, Berlin, Alejandro, MD, Have, Cherry L, BSc, Ramnarine, Varune R, BCS, Yao, Cindy Q, MSc, Malloff, Chad A, MSc, Lam, Lucia L, BSc, Xie, Honglei, MMath, Harding, Nicholas J, PhD, Mak, Denise Y F, PhD, Chu, Kenneth C, PhD, Chong, Lauren C, BCS, Sendorek, Dorota H, BSc, P'ng, Christine, BSc, Collins, Colin C, Prof, Squire, Jeremy A, Prof, Jurisica, Igor, Prof, Cooper, Colin, PhD, Eeles, Rosalind, Prof, Pintilie, Melania, MSc, Dal Pra, Alan, MD, Davicioni, Elai, PhD, Lam, Wan L, Prof, Milosevic, Michael, MD, Neal, David E, Prof, van der Kwast, Theodorus, Prof, Boutros, Paul C, Prof, Bristow, Robert G, Prof
Published in The lancet oncology (01.12.2014)
Published in The lancet oncology (01.12.2014)
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Temporal Stability and Prognostic Biomarker Potential of the Prostate Cancer Urine miRNA Transcriptome
Jeon, Jouhyun, Olkhov-Mitsel, Ekaterina, Xie, Honglei, Yao, Cindy Q, Zhao, Fang, Jahangiri, Sahar, Cuizon, Carmelle, Scarcello, Seville, Jeyapala, Renu, Watson, John D, Fraser, Michael, Ray, Jessica, Commisso, Kristina, Loblaw, Andrew, Fleshner, Neil E, Bristow, Robert G, Downes, Michelle, Vesprini, Danny, Liu, Stanley, Bapat, Bharati, Boutros, Paul C
Published in JNCI : Journal of the National Cancer Institute (01.03.2020)
Published in JNCI : Journal of the National Cancer Institute (01.03.2020)
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BPG: Seamless, automated and interactive visualization of scientific data
P'ng, Christine, Green, Jeffrey, Chong, Lauren C, Waggott, Daryl, Prokopec, Stephenie D, Shamsi, Mehrdad, Nguyen, Francis, Mak, Denise Y F, Lam, Felix, Albuquerque, Marco A, Wu, Ying, Jung, Esther H, Starmans, Maud H W, Chan-Seng-Yue, Michelle A, Yao, Cindy Q, Liang, Bianca, Lalonde, Emilie, Haider, Syed, Simone, Nicole A, Sendorek, Dorota, Chu, Kenneth C, Moon, Nathalie C, Fox, Natalie S, Grzadkowski, Michal R, Harding, Nicholas J, Fung, Clement, Murdoch, Amanda R, Houlahan, Kathleen E, Wang, Jianxin, Garcia, David R, de Borja, Richard, Sun, Ren X, Lin, Xihui, Chen, Gregory M, Lu, Aileen, Shiah, Yu-Jia, Zia, Amin, Kearns, Ryan, Boutros, Paul C
Published in BMC bioinformatics (21.01.2019)
Published in BMC bioinformatics (21.01.2019)
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Computational approaches to support comparative analysis of multiparametric tests: Modelling versus Training
Bartlett, John M. S., Bayani, Jane, Kornaga, Elizabeth N., Danaher, Patrick, Crozier, Cheryl, Piper, Tammy, Yao, Cindy Q., Dunn, Janet A., Boutros, Paul C., Stein, Robert C.
Published in PloS one (03.09.2020)
Published in PloS one (03.09.2020)
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Genome-wide germline correlates of the epigenetic landscape of prostate cancer
Houlahan, Kathleen E., Shiah, Yu-Jia, Gusev, Alexander, Yuan, Jiapei, Ahmed, Musaddeque, Shetty, Anamay, Ramanand, Susmita G., Yao, Cindy Q., Bell, Connor, O’Connor, Edward, Huang, Vincent, Fraser, Michael, Heisler, Lawrence E., Livingstone, Julie, Yamaguchi, Takafumi N., Rouette, Alexandre, Foucal, Adrien, Espiritu, Shadrielle Melijah G., Sinha, Ankit, Sam, Michelle, Timms, Lee, Johns, Jeremy, Wong, Ada, Murison, Alex, Orain, Michèle, Picard, Valérie, Hovington, Hélène, Bergeron, Alain, Lacombe, Louis, Lupien, Mathieu, Fradet, Yves, Têtu, Bernard, McPherson, John D., Pasaniuc, Bogdan, Kislinger, Thomas, Chua, Melvin L. K., Pomerantz, Mark M., van der Kwast, Theodorus, Freedman, Matthew L., Mani, Ram S., He, Housheng H., Bristow, Robert G., Boutros, Paul C.
Published in Nature medicine (01.10.2019)
Published in Nature medicine (01.10.2019)
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Deregulation of the spindle assembly checkpoint is associated with paclitaxel resistance in ovarian cancer
Chong, Taryne, Sarac, Amila, Yao, Cindy Q, Liao, Linda, Lyttle, Nicola, Boutros, Paul C, Bartlett, John M S, Spears, Melanie
Published in Journal of ovarian research (04.04.2018)
Published in Journal of ovarian research (04.04.2018)
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Translating a Prognostic DNA Genomic Classifier into the Clinic: Retrospective Validation in 563 Localized Prostate Tumors
Lalonde, Emilie, Alkallas, Rached, Chua, Melvin Lee Kiang, Fraser, Michael, Haider, Syed, Meng, Alice, Zheng, Junyan, Yao, Cindy Q, Picard, Valerie, Orain, Michele, Hovington, Helène, Murgic, Jure, Berlin, Alejandro, Lacombe, Louis, Bergeron, Alain, Fradet, Yves, Têtu, Bernard, Lindberg, Johan, Egevad, Lars, Grönberg, Henrik, Ross-Adams, Helen, Lamb, Alastair D, Halim, Silvia, Dunning, Mark J, Neal, David E, Pintilie, Melania, van der Kwast, Theodorus, Bristow, Robert G, Boutros, Paul C
Published in European urology (01.07.2017)
Published in European urology (01.07.2017)
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Identification of Differentially Expressed Proteins in Direct Expressed Prostatic Secretions of Men with Organ-confined Versus Extracapsular Prostate Cancer
Kim, Yunee, Ignatchenko, Vladimir, Yao, Cindy Q., Kalatskaya, Irina, Nyalwidhe, Julius O., Lance, Raymond S., Gramolini, Anthony O., Troyer, Dean A., Stein, Lincoln D., Boutros, Paul C., Medin, Jeffrey A., Semmes, O. John, Drake, Richard R., Kislinger, Thomas
Published in Molecular & cellular proteomics (01.12.2012)
Published in Molecular & cellular proteomics (01.12.2012)
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Pathway-based subnetworks enable cross-disease biomarker discovery
Haider, Syed, Yao, Cindy Q., Sabine, Vicky S., Grzadkowski, Michal, Stimper, Vincent, Starmans, Maud H. W., Wang, Jianxin, Nguyen, Francis, Moon, Nathalie C., Lin, Xihui, Drake, Camilla, Crozier, Cheryl A., Brookes, Cassandra L., van de Velde, Cornelis J. H., Hasenburg, Annette, Kieback, Dirk G., Markopoulos, Christos J., Dirix, Luc Y., Seynaeve, Caroline, Rea, Daniel W., Kasprzyk, Arek, Lambin, Philippe, Lio’, Pietro, Bartlett, John M. S., Boutros, Paul C.
Published in Nature communications (12.11.2018)
Published in Nature communications (12.11.2018)
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NanoStringNormCNV: pre-processing of NanoString CNV data
Sendorek, Dorota H, Lalonde, Emilie, Yao, Cindy Q, Sabelnykova, Veronica Y, Bristow, Robert G, Boutros, Paul C
Published in Bioinformatics (15.03.2018)
Published in Bioinformatics (15.03.2018)
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Hypoxia promotes stem cell phenotypes and poor prognosis through epigenetic regulation of DICER
van den Beucken, Twan, Koch, Elizabeth, Chu, Kenneth, Rupaimoole, Rajesha, Prickaerts, Peggy, Adriaens, Michiel, Voncken, Jan Willem, Harris, Adrian L., Buffa, Francesca M., Haider, Syed, Starmans, Maud H. W., Yao, Cindy Q., Ivan, Mircea, Ivan, Cristina, Pecot, Chad V., Boutros, Paul C., Sood, Anil K., Koritzinsky, Marianne, Wouters, Bradly G.
Published in Nature communications (29.10.2014)
Published in Nature communications (29.10.2014)
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Downregulation of histone H2A and H2B pathways is associated with anthracycline sensitivity in breast cancer
Braunstein, Marsela, Liao, Linda, Lyttle, Nicola, Lobo, Nazleen, Taylor, Karen J, Krzyzanowski, Paul M, Kalatskaya, Irina, Yao, Cindy Q, Stein, Lincoln D, Boutros, Paul C, Twelves, Christopher J, Marcellus, Richard, Bartlett, John M S, Spears, Melanie
Published in Breast cancer research : BCR (06.02.2016)
Published in Breast cancer research : BCR (06.02.2016)
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Comparative toxicoproteogenomics of mouse and rat liver identifies TCDD-resistance genes
Prokopec, Stephenie D., Lu, Aileen, Lee, Sandy Che-Eun S., Yao, Cindy Q., Sun, Ren X., Watson, John D., Soliymani, Rabah, de Borja, Richard, Wong, Ada, Sam, Michelle, Zuzarte, Philip, McPherson, John D., Okey, Allan B., Pohjanvirta, Raimo, Boutros, Paul C.
Published in Archives of toxicology (01.10.2019)
Published in Archives of toxicology (01.10.2019)
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