Architecture of the human regulatory network derived from ENCODE data
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Published in Nature (London) (06.09.2012)
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The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles
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Published in Genome Biology (18.04.2023)
Published in Genome Biology (18.04.2023)
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Cooperative transcription factor associations discovered using regulatory variation
Karczewski, Konrad J, Tatonetti, Nicholas P, Landt, Stephen G, Yang, Xinqiong, Slifer, Teri, Altman, Russ B, Snyder, Michael
Published in Proceedings of the National Academy of Sciences - PNAS (09.08.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (09.08.2011)
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Expanded encyclopaedias of DNA elements in the human and mouse genomes
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Published in Nature (London) (30.07.2020)
Published in Nature (London) (30.07.2020)
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An integrated encyclopedia of DNA elements in the human genome
Kundaje, Anshul, Collins, Patrick J, Davis, Carrie A, Khatun, Jainab, Lajoie, Bryan R, Landt, Stephen G, Safi, Alexias, Altshuler, Robert C, Cheng, Chao, Greven, Melissa, Hoffman, Michael M, Lassmann, Timo, Thurman, Robert E, Wu, Weisheng, Xi, Hualin S, Zhuang, Jiali, Gunter, Chris, Dekker, Job, Elnitski, Laura, Giddings, Morgan C, Margulies, Elliott H, Stamatoyannopoulos, John A, Wold, Barbara, Kuiper, Heather C, Dobin, Alex, Tanzer, Andrea, Xue, Chenghai, Zaleski, Chris, Roder, Maik, Baer, Michael T, Bell, Kimberly, Gordon, Assaf, Howald, Cedric, Johnson, Rory, Kingswood, Colin, Li, Guoliang, Luo, Oscar J, Robyr, Daniel, Ruan, Xiaoan, Skancke, Jorgen, Suzuki, Ana Maria, Takahashi, Hazuki, Tilgner, Hagen, Wang, Huaien, Hayashizaki, Yoshihide, Hannon, Gregory J, Malladi, Venkat S, Dreszer, Timothy R, Showers, Kimberly A, London, Darin, Zhang, Zhancheng, Keefe, Damian, Zheng, Meizhen, Vielmetter, Jost, Jain, Preti, Pusey, Barbara, Meadows, Sarah K, Absher, Devin M, Pennachio, Len A, Abyzov, Alexej, Barrell, Daniel, Bignell, Alexandra, Diekhans, Mark, Ezkurdia, Iakes, Frankish, Adam, Hunt, Toby, Jungreis, Irwin, Loveland, Jane, Manthravadi, Deepa, Pei, Baikang, Snow, Catherine, Zhang, Zhengdong, Alexander, Roger P, Balasubramanian, Suganthi, Bettinger, Keith, Cayting, Philip, Habegger, Lukas, Lamarre-Vincent, Nathan, Lindahl-Allen, Marianne, Monahan, Hannah, Patacsil, Dorrelyn, Struhl, Kevin, Ma, Lijia, Inoue, Daigo, Kellner, Tanja, Kirchmaier, Stephan, Bates, Daniel L, Canfield, Theresa K, Boatman, Lisa, Neph, Shane J, Roach, Vaughn, Sanchez, Minerva E, Shafer, Anthony O, Vernot, Benjamin, Weaver, Molly A, Akey, Joshua M, Bender, Michael, Navas, Patrick, Hussami, Nadine, Schaub, Marc A
Published in Nature (London) (06.09.2012)
Published in Nature (London) (06.09.2012)
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Perspectives on ENCODE
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Published in Nature (London) (30.07.2020)
Published in Nature (London) (30.07.2020)
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Published in Nature (London) (20.11.2014)
Published in Nature (London) (20.11.2014)
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Detection and analysis of complex structural variation in human genomes across populations and in brains of donors with psychiatric disorders
Zhou, Bo, Arthur, Joseph G., Guo, Hanmin, Kim, Taeyoung, Huang, Yiling, Pattni, Reenal, Wang, Tao, Kundu, Soumya, Luo, Jay X.J., Lee, HoJoon, Nachun, Daniel C., Purmann, Carolin, Monte, Emma M., Weimer, Annika K., Qu, Ping-Ping, Shi, Minyi, Jiang, Lixia, Yang, Xinqiong, Fullard, John F., Bendl, Jaroslav, Girdhar, Kiran, Kim, Minsu, Chen, Xi, Greenleaf, William J., Duncan, Laramie, Ji, Hanlee P., Zhu, Xiang, Song, Giltae, Montgomery, Stephen B., Palejev, Dean, zu Dohna, Heinrich, Roussos, Panos, Kundaje, Anshul, Hallmayer, Joachim F., Snyder, Michael P., Wong, Wing H., Urban, Alexander E.
Published in Cell (28.09.2024)
Published in Cell (28.09.2024)
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Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes
Moore, Jill E, Purcaro, Michael J, Pratt, Henry E, Epstein, Charles B, Shoresh, Noam, Adrian, Jessika, Kawli, Trupti, Davis, Carrie A, Dobin, Alexander, Kaul, Rajinder, Halow, Jessica, Van Nostrand, Eric L, Freese, Peter, Gorkin, David U, Shen, Yin, He, Yupeng, Mackiewicz, Mark, Pauli-Behn, Florencia, Williams, Brian A, Mortazavi, Ali, Keller, Cheryl A, Zhang, Xiao-Ou, Elhajjajy, Shaimae I, Huey, Jack, Dickel, Diane E, Snetkova, Valentina, Wei, Xintao, Wang, Xiaofeng, Rivera-Mulia, Juan Carlos, Rozowsky, Joel, Zhang, Jing, Chhetri, Surya B, Zhang, Jialing, Victorsen, Alec, White, Kevin P, Visel, Axel, Yeo, Gene W, Burge, Christopher B, Lécuyer, Eric, Gilbert, David M, Dekker, Job, Rinn, John, Mendenhall, Eric M, Ecker, Joseph R, Kellis, Manolis, Klein, Robert J, Noble, William S, Kundaje, Anshul, Guigó, Roderic, Farnham, Peggy J, Cherry, J Michael, Myers, Richard M, Ren, Bing, Graveley, Brenton R, Gerstein, Mark B, Pennacchio, Len A, Snyder, Michael P, Bernstein, Bradley E, Wold, Barbara, Hardison, Ross C, Gingeras, Thomas R, Stamatoyannopoulos, John A, Weng, Zhiping
Published in Nature (London) (12.05.2022)
Published in Nature (London) (12.05.2022)
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Author Correction: Perspectives on ENCODE
Snyder, Michael P, Gingeras, Thomas R, Moore, Jill E, Weng, Zhiping, Gerstein, Mark B, Ren, Bing, Hardison, Ross C, Stamatoyannopoulos, John A, Graveley, Brenton R, Feingold, Elise A, Pazin, Michael J, Pagan, Michael, Gilchrist, Daniel A, Hitz, Benjamin C, Cherry, J Michael, Bernstein, Bradley E, Mendenhall, Eric M, Zerbino, Daniel R, Frankish, Adam, Flicek, Paul, Myers, Richard M
Published in Nature (London) (12.05.2022)
Published in Nature (London) (12.05.2022)
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The ENCODE mouse postnatal developmental time course identifies regulatory programs of cell types and cell states
Rebboah, Elisabeth, Rezaie, Narges, Williams, Brian A, Weimer, Annika K, Shi, Minyi, Yang, Xinqiong, Liang, Heidi Yahan, Dionne, Louise A, Reese, Fairlie, Trout, Diane, Jou, Jennifer, Youngworth, Ingrid, Reinholdt, Laura, Morabito, Samuel, Snyder, Michael P, Wold, Barbara J, Mortazavi, Ali
Published in bioRxiv (14.06.2024)
Published in bioRxiv (14.06.2024)
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The ENCODE Imputation Challenge: A critical assessment of methods for cross-cell type imputation of epigenomic profiles
Schreiber, Jacob Matthew, Boix, Carles A, Lee, Jin Wook, Li, Hongyang, Guan, Yuanfang, Chang, Chun-Chieh, Jen-Chien, Chang, Hawkins-Hooker, Alex, Schoelkopf, Bernhard, Schweikert, Gabriele, Mateo Rojas Carulla, Canakoglu, Arif, Guzzo, Francesco, Nanni, Luca, Masseroli, Marco, Carman, Mark James, Pinoli, Pietro, Hong, Chenyang, Yip, Kevin Y, Spence, Jeffrey P, Sanjit Singh Batra, Song, Yun S, Mahony, Shaun, Zhang, Zheng, Tan, Wuwei, Shen, Yang, Sun, Yuanfei, Shi, Minyi, Jessika Adrian, Sandstrom, Richard S, Farrell, Nina, Halow, Jessica M, Lee, Kristen, Jiang, Lixia, Yang, Xinqiong, Epstein, Charles B, Strattan, J Seth, Snyder, Michael P, Kellis, Manolis, Noble, William S, Kundaje, Anshul Bharat
Published in bioRxiv (02.08.2022)
Published in bioRxiv (02.08.2022)
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