Protein sequence design with deep generative models
Wu, Zachary, Johnston, Kadina E., Arnold, Frances H., Yang, Kevin K.
Published in Current opinion in chemical biology (01.12.2021)
Published in Current opinion in chemical biology (01.12.2021)
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Journal Article
Learned protein embeddings for machine learning
Yang, Kevin K, Wu, Zachary, Bedbrook, Claire N, Arnold, Frances H
Published in Bioinformatics (01.08.2018)
Published in Bioinformatics (01.08.2018)
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Journal Article
Machine learning modeling of family wide enzyme-substrate specificity screens
Goldman, Samuel, Das, Ria, Yang, Kevin K, Coley, Connor W
Published in PLoS computational biology (01.02.2022)
Published in PLoS computational biology (01.02.2022)
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Journal Article
Endothelial contribution to COVID-19: an update on mechanisms and therapeutic implications
Ma, Zhangjing, Yang, Kevin Y., Huang, Yu, Lui, Kathy O.
Published in Journal of molecular and cellular cardiology (01.03.2022)
Published in Journal of molecular and cellular cardiology (01.03.2022)
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Journal Article
Analyzing Learned Molecular Representations for Property Prediction
Yang, Kevin, Swanson, Kyle, Jin, Wengong, Coley, Connor, Eiden, Philipp, Gao, Hua, Guzman-Perez, Angel, Hopper, Timothy, Kelley, Brian, Mathea, Miriam, Palmer, Andrew, Settels, Volker, Jaakkola, Tommi, Jensen, Klavs, Barzilay, Regina
Published in Journal of chemical information and modeling (26.08.2019)
Published in Journal of chemical information and modeling (26.08.2019)
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Journal Article
Machine learning to design integral membrane channelrhodopsins for efficient eukaryotic expression and plasma membrane localization
Bedbrook, Claire N, Yang, Kevin K, Rice, Austin J, Gradinaru, Viviana, Arnold, Frances H
Published in PLoS computational biology (01.10.2017)
Published in PLoS computational biology (01.10.2017)
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Journal Article
MSBooster: improving peptide identification rates using deep learning-based features
Yang, Kevin L, Yu, Fengchao, Teo, Guo Ci, Li, Kai, Demichev, Vadim, Ralser, Markus, Nesvizhskii, Alexey I
Published in Nature communications (27.07.2023)
Published in Nature communications (27.07.2023)
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Journal Article
Microdosing psilocybin for chronic pain: a case series
Lyes, Matthew, Yang, Kevin H, Castellanos, Joel, Furnish, Timothy
Published in Pain (Amsterdam) (01.04.2023)
Published in Pain (Amsterdam) (01.04.2023)
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Journal Article
A Deep Learning Approach to Antibiotic Discovery
Stokes, Jonathan M., Yang, Kevin, Swanson, Kyle, Jin, Wengong, Cubillos-Ruiz, Andres, Donghia, Nina M., MacNair, Craig R., French, Shawn, Carfrae, Lindsey A., Bloom-Ackermann, Zohar, Tran, Victoria M., Chiappino-Pepe, Anush, Badran, Ahmed H., Andrews, Ian W., Chory, Emma J., Church, George M., Brown, Eric D., Jaakkola, Tommi S., Barzilay, Regina, Collins, James J.
Published in Cell (20.02.2020)
Published in Cell (20.02.2020)
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Journal Article
Masked inverse folding with sequence transfer for protein representation learning
Yang, Kevin K, Zanichelli, Niccolò, Yeh, Hugh
Published in Protein engineering, design and selection (21.01.2023)
Published in Protein engineering, design and selection (21.01.2023)
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Journal Article
Protein structure generation via folding diffusion
Wu, Kevin E, Yang, Kevin K, van den Berg, Rianne, Alamdari, Sarah, Zou, James Y, Lu, Alex X, Amini, Ava P
Published in Nature communications (05.02.2024)
Published in Nature communications (05.02.2024)
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Journal Article
Minimally-Invasive Ureteral Reconstruction for Ureteral Complications of Kidney Transplants
Yang, Kevin K, Moinzadeh, Alireza, Sorcini, Andrea
Published in Urology (Ridgewood, N.J.) (01.04.2019)
Published in Urology (Ridgewood, N.J.) (01.04.2019)
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