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Published in Nature biotechnology (01.05.2022)
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Circulating Cytokines Predict Immune-Related Toxicity in Melanoma Patients Receiving Anti-PD-1-Based Immunotherapy
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Transcriptional downregulation of MHC class I and melanoma de- differentiation in resistance to PD-1 inhibition
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Published in Nature communications (20.04.2020)
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scDC: single cell differential composition analysis
Cao, Yue, Lin, Yingxin, Ormerod, John T, Yang, Pengyi, Yang, Jean Y H, Lo, Kitty K
Published in BMC bioinformatics (24.12.2019)
Published in BMC bioinformatics (24.12.2019)
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Atlas-scale single-cell multi-sample multi-condition data integration using scMerge2
Lin, Yingxin, Cao, Yue, Willie, Elijah, Patrick, Ellis, Yang, Jean Y H
Published in Nature communications (17.07.2023)
Published in Nature communications (17.07.2023)
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Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis
Geddes, Thomas A, Kim, Taiyun, Nan, Lihao, Burchfield, James G, Yang, Jean Y H, Tao, Dacheng, Yang, Pengyi
Published in BMC bioinformatics (24.12.2019)
Published in BMC bioinformatics (24.12.2019)
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Ensemble deep learning in bioinformatics
Cao, Yue, Geddes, Thomas Andrew, Yang, Jean Yee Hwa, Yang, Pengyi
Published in Nature machine intelligence (01.09.2020)
Published in Nature machine intelligence (01.09.2020)
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The impact of device-assisted therapies on the gut microbiome in Parkinson’s disease
Lubomski, Michal, Xu, Xiangnan, Holmes, Andrew J., Yang, Jean Y. H., Sue, Carolyn M., Davis, Ryan L.
Published in Journal of neurology (01.02.2022)
Published in Journal of neurology (01.02.2022)
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BIDCell: Biologically-informed self-supervised learning for segmentation of subcellular spatial transcriptomics data
Fu, Xiaohang, Lin, Yingxin, Lin, David M, Mechtersheimer, Daniel, Wang, Chuhan, Ameen, Farhan, Ghazanfar, Shila, Patrick, Ellis, Kim, Jinman, Yang, Jean Y H
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Scalable workflow for characterization of cell-cell communication in COVID-19 patients
Lin, Yingxin, Loo, Lipin, Tran, Andy, Lin, David M, Moreno, Cesar, Hesselson, Daniel, Neely, G. Gregory, Yang, Jean Y. H
Published in PLoS computational biology (05.10.2022)
Published in PLoS computational biology (05.10.2022)
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Dynamic Adipocyte Phosphoproteome Reveals that Akt Directly Regulates mTORC2
Humphrey, Sean J., Yang, Guang, Yang, Pengyi, Fazakerley, Daniel J., Stöckli, Jacqueline, Yang, Jean Y., James, David E.
Published in Cell metabolism (04.06.2013)
Published in Cell metabolism (04.06.2013)
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Single-cell RNA-Seq analysis reveals dynamic trajectories during mouse liver development
Su, Xianbin, Shi, Yi, Zou, Xin, Lu, Zhao-Ning, Xie, Gangcai, Yang, Jean Y H, Wu, Chong-Chao, Cui, Xiao-Fang, He, Kun-Yan, Luo, Qing, Qu, Yu-Lan, Wang, Na, Wang, Lan, Han, Ze-Guang
Published in BMC genomics (04.12.2017)
Published in BMC genomics (04.12.2017)
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PD-L1 Expression and Immune Escape in Melanoma Resistance to MAPK Inhibitors
Kakavand, Hojabr, Rawson, Robert V, Pupo, Gulietta M, Yang, Jean Y H, Menzies, Alexander M, Carlino, Matteo S, Kefford, Richard F, Howle, Julie R, Saw, Robyn P M, Thompson, John F, Wilmott, James S, Long, Georgina V, Scolyer, Richard A, Rizos, Helen
Published in Clinical cancer research (15.10.2017)
Published in Clinical cancer research (15.10.2017)
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Distinct Molecular Profiles and Immunotherapy Treatment Outcomes of V600E and V600K BRAF -Mutant Melanoma
Pires da Silva, Inês, Wang, Kevin Y X, Wilmott, James S, Holst, Jeff, Carlino, Matteo S, Park, John J, Quek, Camelia, Wongchenko, Matthew, Yan, Yibing, Mann, Graham, Johnson, Douglas B, McQuade, Jennifer L, Rai, Rajat, Kefford, Richard F, Rizos, Helen, Scolyer, Richard A, Yang, Jean Y H, Long, Georgina V, Menzies, Alexander M
Published in Clinical cancer research (15.02.2019)
Published in Clinical cancer research (15.02.2019)
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LC-N2G: a local consistency approach for nutrigenomics data analysis
Xu, Xiangnan, Solon-Biet, Samantha M, Senior, Alistair, Raubenheimer, David, Simpson, Stephen J, Fontana, Luigi, Mueller, Samuel, Yang, Jean Y H
Published in BMC bioinformatics (17.11.2020)
Published in BMC bioinformatics (17.11.2020)
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Whole-genome landscapes of major melanoma subtypes
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Published in Nature (London) (11.05.2017)
Published in Nature (London) (11.05.2017)
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