Metagenome-wide association of gut microbiome features for schizophrenia
Zhu, Feng, Ju, Yanmei, Wang, Wei, Wang, Qi, Guo, Ruijin, Ma, Qingyan, Sun, Qiang, Fan, Yajuan, Xie, Yuying, Yang, Zai, Jie, Zhuye, Zhao, Binbin, Xiao, Liang, Yang, Lin, Zhang, Tao, Feng, Junqin, Guo, Liyang, He, Xiaoyan, Chen, Yunchun, Chen, Ce, Gao, Chengge, Xu, Xun, Yang, Huanming, Wang, Jian, Dang, Yonghui, Madsen, Lise, Brix, Susanne, Kristiansen, Karsten, Jia, Huijue, Ma, Xiancang
Published in Nature communications (31.03.2020)
Published in Nature communications (31.03.2020)
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Enhancing CRISPR-Cas9 gRNA efficiency prediction by data integration and deep learning
Xiang, Xi, Corsi, Giulia I, Anthon, Christian, Qu, Kunli, Pan, Xiaoguang, Liang, Xue, Han, Peng, Dong, Zhanying, Liu, Lijun, Zhong, Jiayan, Ma, Tao, Wang, Jinbao, Zhang, Xiuqing, Jiang, Hui, Xu, Fengping, Liu, Xin, Xu, Xun, Wang, Jian, Yang, Huanming, Bolund, Lars, Church, George M, Lin, Lin, Gorodkin, Jan, Luo, Yonglun
Published in Nature communications (28.05.2021)
Published in Nature communications (28.05.2021)
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Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity
Liu, Longqi, Liu, Chuanyu, Quintero, Andrés, Wu, Liang, Yuan, Yue, Wang, Mingyue, Cheng, Mengnan, Leng, Lizhi, Xu, Liqin, Dong, Guoyi, Li, Rui, Liu, Yang, Wei, Xiaoyu, Xu, Jiangshan, Chen, Xiaowei, Lu, Haorong, Chen, Dongsheng, Wang, Quanlei, Zhou, Qing, Lin, Xinxin, Li, Guibo, Liu, Shiping, Wang, Qi, Wang, Hongru, Fink, J Lynn, Gao, Zhengliang, Liu, Xin, Hou, Yong, Zhu, Shida, Yang, Huanming, Ye, Yunming, Lin, Ge, Chen, Fang, Herrmann, Carl, Eils, Roland, Shang, Zhouchun, Xu, Xun
Published in Nature communications (28.01.2019)
Published in Nature communications (28.01.2019)
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SNP detection for massively parallel whole-genome resequencing
Li, Ruiqiang, Li, Yingrui, Fang, Xiaodong, Yang, Huanming, Wang, Jian, Kristiansen, Karsten, Wang, Jun
Published in Genome Research (01.06.2009)
Published in Genome Research (01.06.2009)
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Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma
Sun, Yunfan, Wu, Liang, Zhong, Yu, Zhou, Kaiqian, Hou, Yong, Wang, Zifei, Zhang, Zefan, Xie, Jiarui, Wang, Chunqing, Chen, Dandan, Huang, Yaling, Wei, Xiaochan, Shi, Yinghong, Zhao, Zhikun, Li, Yuehua, Guo, Ziwei, Yu, Qichao, Xu, Liqin, Volpe, Giacomo, Qiu, Shuangjian, Zhou, Jian, Ward, Carl, Sun, Huichuan, Yin, Ye, Xu, Xun, Wang, Xiangdong, Esteban, Miguel A., Yang, Huanming, Wang, Jian, Dean, Michael, Zhang, Yaguang, Liu, Shiping, Yang, Xinrong, Fan, Jia
Published in Cell (21.01.2021)
Published in Cell (21.01.2021)
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SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data
Chen, Yuxin, Chen, Yongsheng, Shi, Chunmei, Huang, Zhibo, Zhang, Yong, Li, Shengkang, Li, Yan, Ye, Jia, Yu, Chang, Li, Zhuo, Zhang, Xiuqing, Wang, Jian, Yang, Huanming, Fang, Lin, Chen, Qiang
Published in Gigascience (01.01.2018)
Published in Gigascience (01.01.2018)
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1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses
Zou, Yuanqiang, Xue, Wenbin, Luo, Guangwen, Deng, Ziqing, Qin, Panpan, Guo, Ruijin, Sun, Haipeng, Xia, Yan, Liang, Suisha, Dai, Ying, Wan, Daiwei, Jiang, Rongrong, Su, Lili, Feng, Qiang, Jie, Zhuye, Guo, Tongkun, Xia, Zhongkui, Liu, Chuan, Yu, Jinghong, Lin, Yuxiang, Tang, Shanmei, Huo, Guicheng, Xu, Xun, Hou, Yong, Liu, Xin, Wang, Jian, Yang, Huanming, Kristiansen, Karsten, Li, Junhua, Jia, Huijue, Xiao, Liang
Published in Nature biotechnology (01.02.2019)
Published in Nature biotechnology (01.02.2019)
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Prophage Hunter: an integrative hunting tool for active prophages
Song, Wenchen, Sun, Hai-Xi, Zhang, Carolyn, Cheng, Li, Peng, Ye, Deng, Ziqing, Wang, Dan, Wang, Yun, Hu, Ming, Liu, Wenen, Yang, Huanming, Shen, Yue, Li, Junhua, You, Lingchong, Xiao, Minfeng
Published in Nucleic acids research (02.07.2019)
Published in Nucleic acids research (02.07.2019)
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An integrated chromatin accessibility and transcriptome landscape of human pre-implantation embryos
Liu, Longqi, Leng, Lizhi, Liu, Chuanyu, Lu, Changfu, Yuan, Yue, Wu, Liang, Gong, Fei, Zhang, Shuoping, Wei, Xiaoyu, Wang, Mingyue, Zhao, Lei, Hu, Liang, Wang, Jian, Yang, Huanming, Zhu, Shida, Chen, Fang, Lu, Guangxiu, Shang, Zhouchun, Lin, Ge
Published in Nature communications (21.01.2019)
Published in Nature communications (21.01.2019)
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Microbial functional changes mark irreversible course of Tibetan grassland degradation
Breidenbach, Andreas, Schleuss, Per-Marten, Liu, Shibin, Schneider, Dominik, Dippold, Michaela A, de la Haye, Tilman, Miehe, Georg, Heitkamp, Felix, Seeber, Elke, Mason-Jones, Kyle, Xu, Xingliang, Huanming, Yang, Xu, Jianchu, Dorji, Tsechoe, Gube, Matthias, Norf, Helge, Meier, Jutta, Guggenberger, Georg, Kuzyakov, Yakov, Spielvogel, Sandra
Published in Nature communications (13.05.2022)
Published in Nature communications (13.05.2022)
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Transplantation of microbiota from drug-free patients with schizophrenia causes schizophrenia-like abnormal behaviors and dysregulated kynurenine metabolism in mice
Zhu, Feng, Guo, Ruijin, Wang, Wei, Ju, Yanmei, Wang, Qi, Ma, Qingyan, Sun, Qiang, Fan, Yajuan, Xie, Yuying, Yang, Zai, Jie, Zhuye, Zhao, Binbin, Xiao, Liang, Yang, Lin, Zhang, Tao, Liu, Bing, Guo, Liyang, He, Xiaoyan, Chen, Yunchun, Chen, Ce, Gao, Chengge, Xu, Xun, Yang, Huanming, Wang, Jian, Dang, Yonghui, Madsen, Lise, Brix, Susanne, Kristiansen, Karsten, Jia, Huijue, Ma, Xiancang
Published in Molecular psychiatry (01.11.2020)
Published in Molecular psychiatry (01.11.2020)
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An atlas of the protein-coding genes in the human, pig, and mouse brain
Sjöstedt, Evelina, Zhong, Wen, Fagerberg, Linn, Karlsson, Max, Mitsios, Nicholas, Adori, Csaba, Oksvold, Per, Edfors, Fredrik, Limiszewska, Agnieszka, Hikmet, Feria, Huang, Jinrong, Du, Yutao, Lin, Lin, Dong, Zhanying, Yang, Ling, Liu, Xin, Jiang, Hui, Xu, Xun, Wang, Jian, Yang, Huanming, Bolund, Lars, Mardinoglu, Adil, Zhang, Cheng, von Feilitzen, Kalle, Lindskog, Cecilia, Pontén, Fredrik, Luo, Yonglun, Hökfelt, Tomas, Uhlén, Mathias, Mulder, Jan
Published in Science (American Association for the Advancement of Science) (06.03.2020)
Published in Science (American Association for the Advancement of Science) (06.03.2020)
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The microbiota continuum along the female reproductive tract and its relation to uterine-related diseases
Chen, Chen, Song, Xiaolei, Wei, Weixia, Zhong, Huanzi, Dai, Juanjuan, Lan, Zhou, Li, Fei, Yu, Xinlei, Feng, Qiang, Wang, Zirong, Xie, Hailiang, Chen, Xiaomin, Zeng, Chunwei, Wen, Bo, Zeng, Liping, Du, Hui, Tang, Huiru, Xu, Changlu, Xia, Yan, Xia, Huihua, Yang, Huanming, Wang, Jian, Wang, Jun, Madsen, Lise, Brix, Susanne, Kristiansen, Karsten, Xu, Xun, Li, Junhua, Wu, Ruifang, Jia, Huijue
Published in Nature communications (17.10.2017)
Published in Nature communications (17.10.2017)
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Gut microbiome-related effects of berberine and probiotics on type 2 diabetes (the PREMOTE study)
Zhang, Yifei, Gu, Yanyun, Ren, Huahui, Wang, Shujie, Zhong, Huanzi, Zhao, Xinjie, Ma, Jing, Gu, Xuejiang, Xue, Yaoming, Huang, Shan, Yang, Jialin, Chen, Li, Chen, Gang, Qu, Shen, Liang, Jun, Qin, Li, Huang, Qin, Peng, Yongde, Li, Qi, Wang, Xiaolin, Kong, Ping, Hou, Guixue, Gao, Mengyu, Shi, Zhun, Li, Xuelin, Qiu, Yixuan, Zou, Yuanqiang, Yang, Huanming, Wang, Jian, Xu, Guowang, Lai, Shenghan, Li, Junhua, Ning, Guang, Wang, Weiqing
Published in Nature communications (06.10.2020)
Published in Nature communications (06.10.2020)
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The structure and function of the global citrus rhizosphere microbiome
Xu, Jin, Zhang, Yunzeng, Zhang, Pengfan, Trivedi, Pankaj, Riera, Nadia, Wang, Yayu, Liu, Xin, Fan, Guangyi, Tang, Jiliang, Coletta-Filho, Helvécio D, Cubero, Jaime, Deng, Xiaoling, Ancona, Veronica, Lu, Zhanjun, Zhong, Balian, Roper, M Caroline, Capote, Nieves, Catara, Vittoria, Pietersen, Gerhard, Vernière, Christian, Al-Sadi, Abdullah M, Li, Lei, Yang, Fan, Xu, Xun, Wang, Jian, Yang, Huanming, Jin, Tao, Wang, Nian
Published in Nature communications (20.11.2018)
Published in Nature communications (20.11.2018)
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Hierarchical graph learning for protein-protein interaction
Gao, Ziqi, Jiang, Chenran, Zhang, Jiawen, Jiang, Xiaosen, Li, Lanqing, Zhao, Peilin, Yang, Huanming, Huang, Yong, Li, Jia
Published in Nature communications (25.02.2023)
Published in Nature communications (25.02.2023)
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Gut microbiome and serum metabolome alterations in obesity and after weight-loss intervention
Liu, Ruixin, Hong, Jie, Xu, Xiaoqiang, Feng, Qiang, Zhang, Dongya, Gu, Yanyun, Shi, Juan, Zhao, Shaoqian, Liu, Wen, Wang, Xiaokai, Xia, Huihua, Liu, Zhipeng, Cui, Bin, Liang, Peiwen, Xi, Liuqing, Jin, Jiabin, Ying, Xiayang, Wang, Xiaolin, Zhao, Xinjie, Li, Wanyu, Jia, Huijue, Lan, Zhou, Li, Fengyu, Wang, Rui, Sun, Yingkai, Yang, Minglan, Shen, Yuxin, Jie, Zhuye, Li, Junhua, Chen, Xiaomin, Zhong, Huanzi, Xie, Hailiang, Zhang, Yifei, Gu, Weiqiong, Deng, Xiaxing, Shen, Baiyong, Xu, Xun, Yang, Huanming, Xu, Guowang, Bi, Yufang, Lai, Shenghan, Wang, Jian, Qi, Lu, Madsen, Lise, Wang, Jiqiu, Ning, Guang, Kristiansen, Karsten, Wang, Weiqing
Published in Nature medicine (01.07.2017)
Published in Nature medicine (01.07.2017)
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The gut microbiome in atherosclerotic cardiovascular disease
Jie, Zhuye, Xia, Huihua, Zhong, Shi-Long, Feng, Qiang, Li, Shenghui, Liang, Suisha, Zhong, Huanzi, Liu, Zhipeng, Gao, Yuan, Zhao, Hui, Zhang, Dongya, Su, Zheng, Fang, Zhiwei, Lan, Zhou, Li, Junhua, Xiao, Liang, Li, Jun, Li, Ruijun, Li, Xiaoping, Li, Fei, Ren, Huahui, Huang, Yan, Peng, Yangqing, Li, Guanglei, Wen, Bo, Dong, Bo, Chen, Ji-Yan, Geng, Qing-Shan, Zhang, Zhi-Wei, Yang, Huanming, Wang, Jian, Wang, Jun, Zhang, Xuan, Madsen, Lise, Brix, Susanne, Ning, Guang, Xu, Xun, Liu, Xin, Hou, Yong, Jia, Huijue, He, Kunlun, Kristiansen, Karsten
Published in Nature communications (10.10.2017)
Published in Nature communications (10.10.2017)
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Earth BioGenome Project: Sequencing life for the future of life
Lewin, Harris A., Robinson, Gene E., Kress, W. John, Baker, William J., Coddington, Jonathan, Crandall, Keith A., Durbin, Richard, Edwards, Scott V., Forest, Félix, Gilbert, M. Thomas P., Goldstein, Melissa M., Grigoriev, Igor V., Hackett, Kevin J., Haussler, David, Jarvis, Erich D., Johnson, Warren E., Patrinos, Aristides, Richards, Stephen, Castilla-Rubio, Juan Carlos, van Sluys, Marie-Anne, Soltis, Pamela S., Xu, Xun, Yang, Huanming, Zhang, Guojie
Published in Proceedings of the National Academy of Sciences - PNAS (24.04.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (24.04.2018)
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