Similarity regression predicts evolution of transcription factor sequence specificity
Lambert, Samuel A., Yang, Ally W. H., Sasse, Alexander, Cowley, Gwendolyn, Albu, Mihai, Caddick, Mark X., Morris, Quaid D., Weirauch, Matthew T., Hughes, Timothy R.
Published in Nature genetics (01.06.2019)
Published in Nature genetics (01.06.2019)
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Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities
Narasimhan, Kamesh, Lambert, Samuel A, Yang, Ally W H, Riddell, Jeremy, Mnaimneh, Sanie, Zheng, Hong, Albu, Mihai, Najafabadi, Hamed S, Reece-Hoyes, John S, Fuxman Bass, Juan I, Walhout, Albertha J M, Weirauch, Matthew T, Hughes, Timothy R
Published in eLife (23.04.2015)
Published in eLife (23.04.2015)
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Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation
Brennan, Kaelan J., Weilert, Melanie, Krueger, Sabrina, Pampari, Anusri, Liu, Hsiao-yun, Yang, Ally W.H., Morrison, Jason A., Hughes, Timothy R., Rushlow, Christine A., Kundaje, Anshul, Zeitlinger, Julia
Published in Developmental cell (09.10.2023)
Published in Developmental cell (09.10.2023)
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Diverse Eukaryotic CGG-Binding Proteins Produced by Independent Domestications of hAT Transposons
Yellan, Isaac, Yang, Ally W H, Hughes, Timothy R
Published in Molecular biology and evolution (04.05.2021)
Published in Molecular biology and evolution (04.05.2021)
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Distinct structural bases for sequence-specific DNA binding by mammalian BEN domain proteins
Zheng, Luqian, Liu, Jingjing, Niu, Lijie, Kamran, Mohammad, Yang, Ally W H, Jolma, Arttu, Dai, Qi, Hughes, Timothy R, Patel, Dinshaw J, Zhang, Long, Prasanth, Supriya G, Yu, Yang, Ren, Aiming, Lai, Eric C
Published in Genes & development (01.02.2022)
Published in Genes & development (01.02.2022)
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The intracellular immune receptor Rx1 regulates the DNA-binding activity of a Golden2-like transcription factor
Townsend, Philip D., Dixon, Christopher H., Slootweg, Erik J., Sukarta, Octavina C.A., Yang, Ally W.H., Hughes, Timothy R., Sharples, Gary J., Pålsson, Lars-Olof, Takken, Frank L.W., Goverse, Aska, Cann, Martin J.
Published in The Journal of biological chemistry (02.03.2018)
Published in The Journal of biological chemistry (02.03.2018)
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A bacteriophage mimic of the bacterial nucleoid-associated protein Fis
Chakraborti, Soumyananda, Balakrishnan, Dhanasekaran, Trotter, Alexander J, Gittens, William H, Yang, Ally W H, Jolma, Arttu, Paterson, Joy R, Świątek, Sylwia, Plewka, Jacek, Curtis, Fiona A, Bowers, Laura Y, Pålsson, Lars-Olof, Hughes, Timothy R, Taube, Michał, Kozak, Maciej, Heddle, Jonathan G, Sharples, Gary J
Published in Biochemical journal (17.04.2020)
Published in Biochemical journal (17.04.2020)
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