A genomic catalog of Earth's microbiomes
Nayfach, Stephen, Roux, Simon, Seshadri, Rekha, Udwary, Daniel, Varghese, Neha, Schulz, Frederik, Wu, Dongying, Paez-Espino, David, Chen, I-Min, Huntemann, Marcel, Palaniappan, Krishna, Ladau, Joshua, Mukherjee, Supratim, Reddy, T B K, Nielsen, Torben, Kirton, Edward, Faria, José P, Edirisinghe, Janaka N, Henry, Christopher S, Jungbluth, Sean P, Chivian, Dylan, Dehal, Paramvir, Wood-Charlson, Elisha M, Arkin, Adam P, Tringe, Susannah G, Visel, Axel, Woyke, Tanja, Mouncey, Nigel J, Ivanova, Natalia N, Kyrpides, Nikos C, Eloe-Fadrosh, Emiley A
Published in Nature biotechnology (01.04.2021)
Published in Nature biotechnology (01.04.2021)
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Journal Article
Targeted CRISPR‐Cas9‐based gene knockouts in the model brown alga Ectocarpus
Badis, Yacine, Scornet, Delphine, Harada, Minori, Caillard, Céline, Godfroy, Olivier, Raphalen, Morgane, Gachon, Claire M. M., Coelho, Susana M., Motomura, Taizo, Nagasato, Chikako, Cock, J. Mark
Published in The New phytologist (01.09.2021)
Published in The New phytologist (01.09.2021)
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A local score approach improves GWAS resolution and detects minor QTL: application to Medicago truncatula quantitative disease resistance to multiple Aphanomyces euteiches isolates
Bonhomme, Maxime, Fariello, Maria Inés, Navier, Hélène, Hajri, Ahmed, Badis, Yacine, Miteul, Henri, Samac, Deborah A, Dumas, Bernard, Baranger, Alain, Jacquet, Christophe, Pilet-Nayel, Marie-Laure
Published in Heredity (01.10.2019)
Published in Heredity (01.10.2019)
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Rediscovering Zygorhizidium affluens Canter: Molecular Taxonomy, Infectious Cycle, and Cryopreservation of a Chytrid Infecting the Bloom-Forming Diatom Asterionella formosa
Rad-Menéndez, Cecilia, Gerphagnon, Mélanie, Garvetto, Andrea, Arce, Paola, Badis, Yacine, Sime-Ngando, Télesphore, Gachon, Claire M M
Published in Applied and environmental microbiology (01.12.2018)
Published in Applied and environmental microbiology (01.12.2018)
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Journal Article
Novel Widespread Marine Oomycetes Parasitising Diatoms, Including the Toxic Genus Pseudo-nitzschia : Genetic, Morphological, and Ecological Characterisation
Garvetto, Andrea, Nézan, Elisabeth, Badis, Yacine, Bilien, Gwenael, Arce, Paola, Bresnan, Eileen, Gachon, Claire M M, Siano, Raffaele
Published in Frontiers in microbiology (03.12.2018)
Published in Frontiers in microbiology (03.12.2018)
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Journal Article
Chytrid infecting the bloom-forming marine diatom Skeletonema sp.: Morphology, phylogeny and distribution of a novel species within the Rhizophydiales
Garvetto, Andrea, Badis, Yacine, Perrineau, Marie-Mathilde, Rad-Menéndez, Cecilia, Bresnan, Eileen, Gachon, Claire M.M.
Published in Fungal biology (01.06.2019)
Published in Fungal biology (01.06.2019)
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Journal Article
High-density genome-wide association mapping implicates an F-box encoding gene in Medicago truncatula resistance to Aphanomyces euteiches
Bonhomme, Maxime, André, Olivier, Badis, Yacine, Ronfort, Joëlle, Burgarella, Concetta, Chantret, Nathalie, Prosperi, Jean‐Marie, Briskine, Roman, Mudge, Joann, Debéllé, Frédéric, Navier, Hélène, Miteul, Henri, Hajri, Ahmed, Baranger, Alain, Tiffin, Peter, Dumas, Bernard, Pilet‐Nayel, Marie‐Laure, Young, Nevin D., Jacquet, Christophe
Published in The New phytologist (01.03.2014)
Published in The New phytologist (01.03.2014)
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Journal Article
Author Correction: A genomic catalog of Earth's microbiomes
Nayfach, Stephen, Roux, Simon, Seshadri, Rekha, Udwary, Daniel, Varghese, Neha, Schulz, Frederik, Wu, Dongying, Paez-Espino, David, Chen, I-Min, Huntemann, Marcel, Palaniappan, Krishna, Ladau, Joshua, Mukherjee, Supratim, Reddy, T B K, Nielsen, Torben, Kirton, Edward, Faria, José P, Edirisinghe, Janaka N, Henry, Christopher S, Jungbluth, Sean P, Chivian, Dylan, Dehal, Paramvir, Wood-Charlson, Elisha M, Arkin, Adam P, Tringe, Susannah G, Visel, Axel, Woyke, Tanja, Mouncey, Nigel J, Ivanova, Natalia N, Kyrpides, Nikos C, Eloe-Fadrosh, Emiley A
Published in Nature biotechnology (01.04.2021)
Published in Nature biotechnology (01.04.2021)
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Journal Article
Holocarpic oomycete parasites of red algae are not Olpidiopsis, but neither are they all Pontisma or Sirolpidium (Oomycota)
Zuccarello, Giuseppe C., Gachon, Claire M. M., Badis, Yacine, Murúa, Pedro, Garvetto, Andrea, Kim, Gwang Hoon
Published in Algae (Korean Phycological Society) (01.03.2024)
Published in Algae (Korean Phycological Society) (01.03.2024)
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Journal Article
Holocarpic oomycete parasites of red algae are not Olpidiopsis, but neither are they all Pontisma or Sirolpidium (Oomycota)
Giuseppe C. Zuccarello, Claire M. M. Gachon, Yacine Badis, Pedro Murua, Andrea Garvetto, Gwang Hoon Kim
Published in Algae (Korean Phycological Society) (2024)
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Published in Algae (Korean Phycological Society) (2024)
Journal Article
Production and Bioassay of a Diffusible Factor That Induces Gametophyte-to-Sporophyte Developmental Reprogramming in the Brown Alga Ectocarpus
Yao, Haiqin, Scornet, Delphine, Badis, Yacine, Peters, Akira F, Jam, Murielle, Hervé, Cécile, Potin, Philippe, Coelho, Susana M, Cock, J Mark
Published in Bio-protocol (20.09.2020)
Published in Bio-protocol (20.09.2020)
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Journal Article
Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)
Brawley, Susan H., Blouin, Nicolas A., Ficko-Blean, Elizabeth, Wheeler, Glen L., Lohr, Martin, Goodson, Holly V., Jenkins, Jerry W., Blaby-Haas, Crysten E., Helliwell, Katherine E., Chan, Cheong Xin, Marriage, Tara N., Bhattacharya, Debashish, Klein, Anita S., Badis, Yacine, Brodie, Juliet, Cao, Yuanyu, Collén, Jonas, Dittami, Simon M., Gachon, Claire M. M., Green, Beverley R., Karpowicz, Steven J., Kim, Jay W., Kudahl, Ulrich Johan, Lin, Senjie, Michel, Gurvan, Mittag, Maria, Olson, Bradley J. S. C., Pangilinan, Jasmyn L., Peng, Yi, Qiu, Huan, Shu, Shengqiang, Singer, John T., Smith, Alison G., Sprecher, Brittany N., Wagner, Volker, Wang, Wenfei, Wang, Zhi-Yong, Yan, Juying, Yarish, Charles, Zäuner-Riek, Simone, Zhuang, Yunyun, Zou, Yong, Lindquist, Erika A., Grimwood, Jane, Barry, Kerrie W., Rokhsar, Daniel S., Schmutz, Jeremy, Stiller, John W., Grossman, Arthur R., Prochnik, Simon E.
Published in Proceedings of the National Academy of Sciences - PNAS (01.08.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (01.08.2017)
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Journal Article
Repeated co-option of HMG-box genes for sex determination in brown algae and animals
Luthringer, Rémy, Raphalen, Morgane, Guerra, Carla, Colin, Sébastien, Martinho, Claudia, Zheng, Min, Hoshino, Masakazu, Badis, Yacine, Lipinska, Agnieszka P, Haas, Fabian B, Barrera-Redondo, Josué, Alva, Vikram, Coelho, Susana M
Published in Science (American Association for the Advancement of Science) (22.03.2024)
Published in Science (American Association for the Advancement of Science) (22.03.2024)
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Journal Article
Novel species of the oomycete Olpidiopsis potentially threaten European red algal cultivation
Badis, Yacine, Klochkova, Tatyana A., Strittmatter, Martina, Garvetto, Andrea, Murúa, Pedro, Sanderson, J. Craig, Kim, Gwang Hoon, Gachon, Claire M. M.
Published in Journal of applied phycology (01.04.2019)
Published in Journal of applied phycology (01.04.2019)
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Journal Article
Transcriptome analysis highlights preformed defences and signalling pathways controlled by the prAe1 quantitative trait locus (QTL), conferring partial resistance to Aphanomyces euteiches in Medicago truncatula
Badis, Yacine, Bonhomme, Maxime, Lafitte, Claude, Huguet, Stéphanie, Balzergue, Sandrine, Dumas, Bernard, Jacquet, Christophe
Published in Molecular plant pathology (01.12.2015)
Published in Molecular plant pathology (01.12.2015)
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Journal Article
The microbiome of the habitat‐forming brown alga Fucus vesiculosus (Phaeophyceae) has similar cross‐Atlantic structure that reflects past and present drivers1
Capistrant‐Fossa, Kyle A., Morrison, Hilary G., Engelen, Aschwin H., Quigley, Charlotte T.C., Morozov, Aleksey, Serrão, Ester A., Brodie, Juliet, Gachon, Claire M.M., Badis, Yacine, Johnson, Ladd E., Hoarau, Galice, Abreu, Maria Helena, Tester, Patricia A., Stearns, Leigh A., Brawley, Susan H., de Oliveira, Mariana Cabral
Published in Journal of phycology (01.12.2021)
Published in Journal of phycology (01.12.2021)
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Journal Article
Hidden diversity in the oomycete genus Olpidiopsis is a potential hazard to red algal cultivation and conservation worldwide
Badis, Yacine, Klochkova, Tatyana A., Brakel, Janina, Arce, Paola, Ostrowski, Martin, Tringe, Susannah G., Kim, Gwang Hoon, Gachon, Claire M.M.
Published in European journal of phycology (02.04.2020)
Published in European journal of phycology (02.04.2020)
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