Programmable Inhibition and Detection of RNA Viruses Using Cas13
Freije, Catherine A., Myhrvold, Cameron, Boehm, Chloe K., Lin, Aaron E., Welch, Nicole L., Carter, Amber, Metsky, Hayden C., Luo, Cynthia Y., Abudayyeh, Omar O., Gootenberg, Jonathan S., Yozwiak, Nathan L., Zhang, Feng, Sabeti, Pardis C.
Published in Molecular cell (05.12.2019)
Published in Molecular cell (05.12.2019)
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Field-deployable viral diagnostics using CRISPR-Cas13
Myhrvold, Cameron, Freije, Catherine A, Gootenberg, Jonathan S, Abudayyeh, Omar O, Metsky, Hayden C, Durbin, Ann F, Kellner, Max J, Tan, Amanda L, Paul, Lauren M, Parham, Leda A, Garcia, Kimberly F, Barnes, Kayla G, Chak, Bridget, Mondini, Adriano, Nogueira, Mauricio L, Isern, Sharon, Michael, Scott F, Lorenzana, Ivette, Yozwiak, Nathan L, MacInnis, Bronwyn L, Bosch, Irene, Gehrke, Lee, Zhang, Feng, Sabeti, Pardis C
Published in Science (American Association for the Advancement of Science) (27.04.2018)
Published in Science (American Association for the Advancement of Science) (27.04.2018)
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Data sharing: Make outbreak research open access
Yozwiak, Nathan L., Schaffner, Stephen F., Sabeti, Pardis C.
Published in Nature (London) (26.02.2015)
Published in Nature (London) (26.02.2015)
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Combining genomics and epidemiology to track mumps virus transmission in the United States
Wohl, Shirlee, Metsky, Hayden C, Schaffner, Stephen F, Piantadosi, Anne, Burns, Meagan, Lewnard, Joseph A, Chak, Bridget, Krasilnikova, Lydia A, Siddle, Katherine J, Matranga, Christian B, Bankamp, Bettina, Hennigan, Scott, Sabina, Brandon, Byrne, Elizabeth H, McNall, Rebecca J, Shah, Rickey R, Qu, James, Park, Daniel J, Gharib, Soheyla, Fitzgerald, Susan, Barreira, Paul, Fleming, Stephen, Lett, Susan, Rota, Paul A, Madoff, Lawrence C, Yozwiak, Nathan L, MacInnis, Bronwyn L, Smole, Sandra, Grad, Yonatan H, Sabeti, Pardis C
Published in PLoS biology (11.02.2020)
Published in PLoS biology (11.02.2020)
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Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak
Gire, Stephen K., Goba, Augustine, Andersen, Kristian G., Sealfon, Rachel S. G., Park, Daniel J., Kanneh, Lansana, Jalloh, Simbirie, Momoh, Mambu, Fullah, Mohamed, Dudas, Gytis, Wohl, Shirlee, Moses, Lina M., Yozwiak, Nathan L., Winnicki, Sarah, Matranga, Christian B., Malboeuf, Christine M., Qu, James, Gladden, Adrianne D., Schaffner, Stephen F., Yang, Xiao, Jiang, Pan-Pan, Nekoui, Mahan, Colubri, Andres, Coomber, Moinya Ruth, Fonnie, Mbalu, Moigboi, Alex, Gbakie, Michael, Kamara, Fatima K., Tucker, Veronica, Konuwa, Edwin, Saffa, Sidiki, Sellu, Josephine, Jalloh, Abdul Azziz, Kovoma, Alice, Koninga, James, Mustapha, Ibrahim, Kargbo, Kandeh, Foday, Momoh, Yillah, Mohamed, Kanneh, Franklyn, Robert, Willie, Massally, James L. B., Chapman, Sinéad B., Bochicchio, James, Murphy, Cheryl, Nusbaum, Chad, Young, Sarah, Birren, Bruce W., Grant, Donald S., Scheiffelin, John S., Lander, Eric S., Happi, Christian, Gevao, Sahr M., Gnirke, Andreas, Rambaut, Andrew, Garry, Robert F., Khan, S. Humarr, Sabeti, Pardis C.
Published in Science (American Association for the Advancement of Science) (12.09.2014)
Published in Science (American Association for the Advancement of Science) (12.09.2014)
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Zika virus evolution and spread in the Americas
Metsky, Hayden C., Matranga, Christian B., Wohl, Shirlee, Schaffner, Stephen F., Freije, Catherine A., Winnicki, Sarah M., West, Kendra, Qu, James, Baniecki, Mary Lynn, Gladden-Young, Adrianne, Lin, Aaron E., Tomkins-Tinch, Christopher H., Ye, Simon H., Park, Daniel J., Luo, Cynthia Y., Barnes, Kayla G., Shah, Rickey R., Chak, Bridget, Barbosa-Lima, Giselle, Delatorre, Edson, Vieira, Yasmine R., Paul, Lauren M., Tan, Amanda L., Barcellona, Carolyn M., Porcelli, Mario C., Vasquez, Chalmers, Cannons, Andrew C., Cone, Marshall R., Hogan, Kelly N., Kopp, Edgar W., Anzinger, Joshua J., Garcia, Kimberly F., Parham, Leda A., Ramírez, Rosa M. Gélvez, Montoya, Maria C. Miranda, Rojas, Diana P., Brown, Catherine M., Hennigan, Scott, Sabina, Brandon, Scotland, Sarah, Gangavarapu, Karthik, Grubaugh, Nathan D., Oliveira, Glenn, Robles-Sikisaka, Refugio, Rambaut, Andrew, Gehrke, Lee, Smole, Sandra, Halloran, M. Elizabeth, Villar, Luis, Mattar, Salim, Lorenzana, Ivette, Cerbino-Neto, Jose, Valim, Clarissa, Degrave, Wim, Bozza, Patricia T., Gnirke, Andreas, Andersen, Kristian G., Isern, Sharon, Michael, Scott F., Bozza, Fernando A., Souza, Thiago M. L., Bosch, Irene, Yozwiak, Nathan L., MacInnis, Bronwyn L., Sabeti, Pardis C.
Published in Nature (London) (15.06.2017)
Published in Nature (London) (15.06.2017)
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Genomic epidemiology reveals multiple introductions of Zika virus into the United States
Grubaugh, Nathan D., Ladner, Jason T., Kraemer, Moritz U. G., Dudas, Gytis, Tan, Amanda L., Gangavarapu, Karthik, Wiley, Michael R., White, Stephen, Thézé, Julien, Magnani, Diogo M., Prieto, Karla, Reyes, Daniel, Bingham, Andrea M., Paul, Lauren M., Robles-Sikisaka, Refugio, Oliveira, Glenn, Pronty, Darryl, Barcellona, Carolyn M., Metsky, Hayden C., Baniecki, Mary Lynn, Barnes, Kayla G., Chak, Bridget, Freije, Catherine A., Gladden-Young, Adrianne, Gnirke, Andreas, Luo, Cynthia, MacInnis, Bronwyn, Matranga, Christian B., Park, Daniel J., Qu, James, Schaffner, Stephen F., Tomkins-Tinch, Christopher, West, Kendra L., Winnicki, Sarah M., Wohl, Shirlee, Yozwiak, Nathan L., Quick, Joshua, Fauver, Joseph R., Khan, Kamran, Brent, Shannon E., Reiner, Robert C., Lichtenberger, Paola N., Ricciardi, Michael J., Bailey, Varian K., Watkins, David I., Cone, Marshall R., Kopp, Edgar W., Hogan, Kelly N., Cannons, Andrew C., Jean, Reynald, Monaghan, Andrew J., Garry, Robert F., Loman, Nicholas J., Faria, Nuno R., Porcelli, Mario C., Vasquez, Chalmers, Nagle, Elyse R., Cummings, Derek A. T., Stanek, Danielle, Rambaut, Andrew, Sanchez-Lockhart, Mariano, Sabeti, Pardis C., Gillis, Leah D., Michael, Scott F., Bedford, Trevor, Pybus, Oliver G., Isern, Sharon, Palacios, Gustavo, Andersen, Kristian G.
Published in Nature (London) (15.06.2017)
Published in Nature (London) (15.06.2017)
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Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018
Siddle, Katherine J, Eromon, Philomena, Barnes, Kayla G, Mehta, Samar, Oguzie, Judith U, Odia, Ikponmwosa, Schaffner, Stephen F, Winnicki, Sarah M, Shah, Rickey R, Qu, James, Wohl, Shirlee, Brehio, Patrick, Iruolagbe, Christopher, Aiyepada, John, Uyigue, Eghosa, Akhilomen, Patience, Okonofua, Grace, Ye, Simon, Kayode, Tolulope, Ajogbasile, Fehintola, Uwanibe, Jessica, Gaye, Amy, Momoh, Mambu, Chak, Bridget, Kotliar, Dylan, Carter, Amber, Gladden-Young, Adrianne, Freije, Catherine A, Omoregie, Omigie, Osiemi, Blessing, Muoebonam, Ekene B, Airende, Michael, Enigbe, Rachael, Ebo, Benevolence, Nosamiefan, Iguosadolo, Oluniyi, Paul, Nekoui, Mahan, Ogbaini-Emovon, Ephraim, Garry, Robert F, Andersen, Kristian G, Park, Daniel J, Yozwiak, Nathan L, Akpede, George, Ihekweazu, Chikwe, Tomori, Oyewale, Okogbenin, Sylvanus, Folarin, Onikepe A, Okokhere, Peter O, MacInnis, Bronwyn L, Sabeti, Pardis C, Happi, Christian T
Published in The New England journal of medicine (01.11.2018)
Published in The New England journal of medicine (01.11.2018)
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Human Enterovirus 109: a Novel Interspecies Recombinant Enterovirus Isolated from a Case of Acute Pediatric Respiratory Illness in Nicaragua
Yozwiak, Nathan L, Skewes-Cox, Peter, Gordon, Aubree, Saborio, Saira, Kuan, Guillermina, Balmaseda, Angel, Ganem, Don, Harris, Eva, DeRisi, Joseph L
Published in Journal of Virology (15.09.2010)
Published in Journal of Virology (15.09.2010)
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Comprehensive profiling of antibody responses to the human anellome using programmable phage display
Venkataraman, Thiagarajan, Swaminathan, Harish, Arze, Cesar A., Jacobo, Sarah M., Bhattacharyya, Agamoni, David, Tyler, Nawandar, Dhananjay M., Delagrave, Simon, Mani, Vinidhra, Yozwiak, Nathan L., Larman, H. Benjamin
Published in Cell reports (Cambridge) (20.12.2022)
Published in Cell reports (Cambridge) (20.12.2022)
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Roots, Not Parachutes: Research Collaborations Combat Outbreaks
Yozwiak, Nathan L., Happi, Christian T., Grant, Donald S., Schieffelin, John S., Garry, Robert F., Sabeti, Pardis C., Andersen, Kristian G.
Published in Cell (30.06.2016)
Published in Cell (30.06.2016)
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Structure of anellovirus-like particles reveal a mechanism for immune evasion
Liou, Shu-hao, Boggavarapu, Rajendra, Cohen, Noah R., Zhang, Yue, Sharma, Ishwari, Zeheb, Lynn, Mukund Acharekar, Nidhi, Rodgers, Hillary D., Islam, Saadman, Pitts, Jared, Arze, Cesar, Swaminathan, Harish, Yozwiak, Nathan, Ong, Tuyen, Hajjar, Roger J., Chang, Yong, Swanson, Kurt A., Delagrave, Simon
Published in Nature communications (22.08.2024)
Published in Nature communications (22.08.2024)
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Global genome analysis reveals a vast and dynamic anellovirus landscape within the human virome
Arze, Cesar A., Springer, Simeon, Dudas, Gytis, Patel, Sneha, Bhattacharyya, Agamoni, Swaminathan, Harish, Brugnara, Carlo, Delagrave, Simon, Ong, Tuyen, Kahvejian, Avak, Echelard, Yann, Weinstein, Erica G., Hajjar, Roger J., Andersen, Kristian G., Yozwiak, Nathan L.
Published in Cell host & microbe (11.08.2021)
Published in Cell host & microbe (11.08.2021)
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Comment on "Mutation rate and genotype variation of Ebola virus from Mali case sequences"
Rambaut, Andrew, Dudas, Gytis, de Carvalho, Luiz Max, Park, Daniel J, Yozwiak, Nathan L, Holmes, Edward C, Andersen, Kristian G
Published in Science (American Association for the Advancement of Science) (12.08.2016)
Published in Science (American Association for the Advancement of Science) (12.08.2016)
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Discovery of novel rhabdoviruses in the blood of healthy individuals from West Africa
Stremlau, Matthew H, Andersen, Kristian G, Folarin, Onikepe A, Grove, Jessica N, Odia, Ikponmwonsa, Ehiane, Philomena E, Omoniwa, Omowunmi, Omoregie, Omigie, Jiang, Pan-Pan, Yozwiak, Nathan L, Matranga, Christian B, Yang, Xiao, Gire, Stephen K, Winnicki, Sarah, Tariyal, Ridhi, Schaffner, Stephen F, Okokhere, Peter O, Okogbenin, Sylvanus, Akpede, George O, Asogun, Danny A, Agbonlahor, Dennis E, Walker, Peter J, Tesh, Robert B, Levin, Joshua Z, Garry, Robert F, Sabeti, Pardis C, Happi, Christian T
Published in PLoS neglected tropical diseases (01.03.2015)
Published in PLoS neglected tropical diseases (01.03.2015)
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Ebola Virus Epidemiology and Evolution in Nigeria
Folarin, Onikepe A., Ehichioya, Deborah, Schaffner, Stephen F., Winnicki, Sarah M., Wohl, Shirlee, Eromon, Philomena, West, Kendra L., Gladden-Young, Adrianne, Oyejide, Nicholas E., Matranga, Christian B., Deme, Awa Bineta, James, Ayorinde, Tomkins-Tinch, Christopher, Onyewurunwa, Kenneth, Ladner, Jason T., Palacios, Gustavo, Nosamiefan, Iguosadolo, Andersen, Kristian G., Omilabu, Sunday, Park, Daniel J., Yozwiak, Nathan L., Nasidi, Abdusallam, Garry, Robert F., Tomori, Oyewale, Sabeti, Pardis C., Happi, Christian T.
Published in The Journal of Infectious Diseases (15.10.2016)
Published in The Journal of Infectious Diseases (15.10.2016)
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Nomenclature- and database-compatible names for the two Ebola virus variants that emerged in Guinea and the Democratic Republic of the Congo in 2014
Kuhn, Jens H, Andersen, Kristian G, Baize, Sylvain, Bào, Yīmíng, Bavari, Sina, Berthet, Nicolas, Blinkova, Olga, Brister, J Rodney, Clawson, Anna N, Fair, Joseph, Gabriel, Martin, Garry, Robert F, Gire, Stephen K, Goba, Augustine, Gonzalez, Jean-Paul, Günther, Stephan, Happi, Christian T, Jahrling, Peter B, Kapetshi, Jimmy, Kobinger, Gary, Kugelman, Jeffrey R, Leroy, Eric M, Maganga, Gael Darren, Mbala, Placide K, Moses, Lina M, Muyembe-Tamfum, Jean-Jacques, N'Faly, Magassouba, Nichol, Stuart T, Omilabu, Sunday A, Palacios, Gustavo, Park, Daniel J, Paweska, Janusz T, Radoshitzky, Sheli R, Rossi, Cynthia A, Sabeti, Pardis C, Schieffelin, John S, Schoepp, Randal J, Sealfon, Rachel, Swanepoel, Robert, Towner, Jonathan S, Wada, Jiro, Wauquier, Nadia, Yozwiak, Nathan L, Formenty, Pierre
Published in Viruses (24.11.2014)
Published in Viruses (24.11.2014)
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Anellovirus Structure Reveals a Mechanism for Immune Evasion
Swanson, Kurt A, Shu-Hao Liou, Delagrave, Simon, Hajiar, Roger, Chang, Yong, Yozwiak, Nathan, Ong, Tuyen, Rodgers, Hillary, Cohen, Noah, Zhang, Yue, Acharekar, Nidhi Mukund, Islam, Saadman, Zaheb, Lynn, Arze, Cesar, Swaminathan, Harish, Pitts, Jared
Published in bioRxiv (02.07.2022)
Published in bioRxiv (02.07.2022)
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