A large-scale binding and functional map of human RNA-binding proteins
Van Nostrand, Eric L., Freese, Peter, Pratt, Gabriel A., Wang, Xiaofeng, Wei, Xintao, Xiao, Rui, Blue, Steven M., Chen, Jia-Yu, Cody, Neal A. L., Dominguez, Daniel, Olson, Sara, Sundararaman, Balaji, Zhan, Lijun, Bazile, Cassandra, Bouvrette, Louis Philip Benoit, Bergalet, Julie, Duff, Michael O., Garcia, Keri E., Gelboin-Burkhart, Chelsea, Hochman, Myles, Lambert, Nicole J., Li, Hairi, McGurk, Michael P., Nguyen, Thai B., Palden, Tsultrim, Rabano, Ines, Sathe, Shashank, Stanton, Rebecca, Su, Amanda, Wang, Ruth, Yee, Brian A., Zhou, Bing, Louie, Ashley L., Aigner, Stefan, Fu, Xiang-Dong, Lécuyer, Eric, Burge, Christopher B., Graveley, Brenton R., Yeo, Gene W.
Published in Nature (London) (30.07.2020)
Published in Nature (London) (30.07.2020)
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Journal Article
Short poly(A) tails are a conserved feature of highly expressed genes
Lima, Sarah Azoubel, Chipman, Laura B, Nicholson, Angela L, Chen, Ying-Hsin, Yee, Brian A, Yeo, Gene W, Coller, Jeff, Pasquinelli, Amy E
Published in Nature structural & molecular biology (01.12.2017)
Published in Nature structural & molecular biology (01.12.2017)
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Journal Article
Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins
Van Nostrand, Eric L, Pratt, Gabriel A, Yee, Brian A, Wheeler, Emily C, Blue, Steven M, Mueller, Jasmine, Park, Samuel S, Garcia, Keri E, Gelboin-Burkhart, Chelsea, Nguyen, Thai B, Rabano, Ines, Stanton, Rebecca, Sundararaman, Balaji, Wang, Ruth, Fu, Xiang-Dong, Graveley, Brenton R, Yeo, Gene W
Published in Genome Biology (06.04.2020)
Published in Genome Biology (06.04.2020)
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Robust single-cell discovery of RNA targets of RNA-binding proteins and ribosomes
Brannan, Kristopher W., Chaim, Isaac A., Marina, Ryan J., Yee, Brian A., Kofman, Eric R., Lorenz, Daniel A., Jagannatha, Pratibha, Dong, Kevin D., Madrigal, Assael A., Underwood, Jason G., Yeo, Gene W.
Published in Nature methods (01.05.2021)
Published in Nature methods (01.05.2021)
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Journal Article
Inhibition of YTHDF2 triggers proteotoxic cell death in MYC-driven breast cancer
Einstein, Jaclyn M., Perelis, Mark, Chaim, Isaac A., Meena, Jitendra K., Nussbacher, Julia K., Tankka, Alexandra T., Yee, Brian A., Li, Heyuan, Madrigal, Assael A., Neill, Nicholas J., Shankar, Archana, Tyagi, Siddhartha, Westbrook, Thomas F., Yeo, Gene W.
Published in Molecular cell (05.08.2021)
Published in Molecular cell (05.08.2021)
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Telehealth-delivered parent-based sleep-focused intervention for insomnia in preschool children with autism spectrum disorder: A randomized controlled study
Ip, Brian Yee Ting, Lee, So-Lun, Li, Shirley Xin
Published in Autism : the international journal of research and practice (01.11.2024)
Published in Autism : the international journal of research and practice (01.11.2024)
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Journal Article
RBP-Maps enables robust generation of splicing regulatory maps
Yee, Brian A, Pratt, Gabriel A, Graveley, Brenton R, Van Nostrand, Eric L, Yeo, Gene W
Published in RNA (Cambridge) (01.02.2019)
Published in RNA (Cambridge) (01.02.2019)
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Journal Article
High-sensitivity in situ capture of endogenous RNA-protein interactions in fixed cells and primary tissues
Liang, Qishan, Yu, Tao, Kofman, Eric, Jagannatha, Pratibha, Rhine, Kevin, Yee, Brian A., Corbett, Kevin D., Yeo, Gene W.
Published in Nature communications (16.08.2024)
Published in Nature communications (16.08.2024)
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Journal Article
Zmat3 Is a Key Splicing Regulator in the p53 Tumor Suppression Program
Bieging-Rolett, Kathryn T., Kaiser, Alyssa M., Morgens, David W., Boutelle, Anthony M., Seoane, Jose A., Van Nostrand, Eric L., Zhu, Changyu, Houlihan, Shauna L., Mello, Stephano S., Yee, Brian A., McClendon, Jacob, Pierce, Sarah E., Winters, Ian P., Wang, Mengxiong, Connolly, Andrew J., Lowe, Scott W., Curtis, Christina, Yeo, Gene W., Winslow, Monte M., Bassik, Michael C., Attardi, Laura D.
Published in Molecular cell (05.11.2020)
Published in Molecular cell (05.11.2020)
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Large-scale tethered function assays identify factors that regulate mRNA stability and translation
Luo, En-Ching, Nathanson, Jason L., Tan, Frederick E., Schwartz, Joshua L., Schmok, Jonathan C., Shankar, Archana, Markmiller, Sebastian, Yee, Brian A., Sathe, Shashank, Pratt, Gabriel A., Scaletta, Duy B., Ha, Yuanchi, Hill, David E., Aigner, Stefan, Yeo, Gene W.
Published in Nature structural & molecular biology (01.10.2020)
Published in Nature structural & molecular biology (01.10.2020)
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Journal Article
Transcriptome-wide identification of RNA-binding protein binding sites using seCLIP-seq
Blue, Steven M., Yee, Brian A., Pratt, Gabriel A., Mueller, Jasmine R., Park, Samuel S., Shishkin, Alexander A., Starner, Anne C., Van Nostrand, Eric L., Yeo, Gene W.
Published in Nature protocols (01.05.2022)
Published in Nature protocols (01.05.2022)
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Journal Article
FLARE: a fast and flexible workflow for identifying RNA editing foci
Kofman, Eric, Yee, Brian, Medina-Munoz, Hugo C, Yeo, Gene W
Published in BMC bioinformatics (02.10.2023)
Published in BMC bioinformatics (02.10.2023)
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Journal Article
Evaluation of Engineered CRISPR-Cas-Mediated Systems for Site-Specific RNA Editing
Marina, Ryan J., Brannan, Kristopher W., Dong, Kevin D., Yee, Brian A., Yeo, Gene W.
Published in Cell reports (Cambridge) (03.11.2020)
Published in Cell reports (Cambridge) (03.11.2020)
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Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death
Arif, Waqar, Mathur, Bhoomika, Saikali, Michael F., Chembazhi, Ullas V., Toohill, Katelyn, Song, You Jin, Hao, Qinyu, Karimi, Saman, Blue, Steven M., Yee, Brian A., Van Nostrand, Eric L., Bangru, Sushant, Guzman, Grace, Yeo, Gene W., Prasanth, Kannanganattu V., Anakk, Sayeepriyadarshini, Cummins, Carolyn L., Kalsotra, Auinash
Published in Nature communications (09.02.2023)
Published in Nature communications (09.02.2023)
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Journal Article
Crosstalk between CRISPR-Cas9 and the human transcriptome
Smargon, Aaron A., Madrigal, Assael A., Yee, Brian A., Dong, Kevin D., Mueller, Jasmine R., Yeo, Gene W.
Published in Nature communications (02.03.2022)
Published in Nature communications (02.03.2022)
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Journal Article
A Transcriptome-Led Exploration of Molecular Mechanisms Regulating Somatostatin-Producing D-Cells in the Gastric Epithelium
Adriaenssens, Alice, Lam, Brian Yee Hong, Billing, Lawrence, Skeffington, Katie, Sewing, Sabine, Reimann, Frank, Gribble, Fiona
Published in Endocrinology (Philadelphia) (01.11.2015)
Published in Endocrinology (Philadelphia) (01.11.2015)
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Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP
Lorenz, Daniel A., Her, Hsuan-Lin, Shen, Kylie A., Rothamel, Katie, Hutt, Kasey R., Nojadera, Allan C., Bruns, Stephanie C., Manakov, Sergei A., Yee, Brian A., Chapman, Karen B., Yeo, Gene W.
Published in Nature methods (01.01.2023)
Published in Nature methods (01.01.2023)
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Journal Article
Epistatic interactions between NMD and TRP53 control progenitor cell maintenance and brain size
Lin, Lin, Zhao, Jingrong, Kubota, Naoto, Li, Zhelin, Lam, Yi-Li, Nguyen, Lauren P., Yang, Lu, Pokharel, Sheela P., Blue, Steven M., Yee, Brian A., Chen, Renee, Yeo, Gene W., Chen, Chun-Wei, Chen, Liang, Zheng, Sika
Published in Neuron (Cambridge, Mass.) (03.07.2024)
Published in Neuron (Cambridge, Mass.) (03.07.2024)
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RNA binding protein DDX5 directs tuft cell specification and function to regulate microbial repertoire and disease susceptibility in the intestine
Long, Tianyun, Abbasi, Nazia, Hernandez, Juan E, Li, Yuxin, Sayed, Ibrahim M, Ma, Shengyun, Iemolo, Attilio, Yee, Brian A, Yeo, Gene W, Telese, Francesca, Ghosh, Pradipta, Das, Soumita, Huang, Wendy Jia Men
Published in Gut (01.09.2022)
Published in Gut (01.09.2022)
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The mRNA Decay Factor CAR-1/LSM14 Regulates Axon Regeneration via Mitochondrial Calcium Dynamics
Tang, Ngang Heok, Kim, Kyung Won, Xu, Suhong, Blazie, Stephen M., Yee, Brian A., Yeo, Gene W., Jin, Yishi, Chisholm, Andrew D.
Published in Current biology (09.03.2020)
Published in Current biology (09.03.2020)
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