Quality prediction for multi-grade batch process using sparse flexible clustered multi-task learning
Yamaguchi, Takafumi, Yamashita, Yoshiyuki
Published in Computers & chemical engineering (01.07.2021)
Published in Computers & chemical engineering (01.07.2021)
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Journal Article
Molecular landmarks of tumor hypoxia across cancer types
Bhandari, Vinayak, Hoey, Christianne, Liu, Lydia Y., Lalonde, Emilie, Ray, Jessica, Livingstone, Julie, Lesurf, Robert, Shiah, Yu-Jia, Vujcic, Tina, Huang, Xiaoyong, Espiritu, Shadrielle M. G., Heisler, Lawrence E., Yousif, Fouad, Huang, Vincent, Yamaguchi, Takafumi N., Yao, Cindy Q., Sabelnykova, Veronica Y., Fraser, Michael, Chua, Melvin L. K., van der Kwast, Theodorus, Liu, Stanley K., Boutros, Paul C., Bristow, Robert G.
Published in Nature genetics (01.02.2019)
Published in Nature genetics (01.02.2019)
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Journal Article
Highly Precise Multifunctional Thermal Management-Based Flexible Sensing Sheets
Xu, Kaichen, Lu, Yuyao, Yamaguchi, Takafumi, Arie, Takayuki, Akita, Seiji, Takei, Kuniharu
Published in ACS nano (24.12.2019)
Published in ACS nano (24.12.2019)
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Journal Article
TMPRSS2–ERG fusion co-opts master transcription factors and activates NOTCH signaling in primary prostate cancer
Kron, Ken J, Murison, Alexander, Zhou, Stanley, Huang, Vincent, Yamaguchi, Takafumi N, Shiah, Yu-Jia, Fraser, Michael, van der Kwast, Theodorus, Boutros, Paul C, Bristow, Robert G, Lupien, Mathieu
Published in Nature genetics (01.09.2017)
Published in Nature genetics (01.09.2017)
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Journal Article
The Evolutionary Landscape of Localized Prostate Cancers Drives Clinical Aggression
Espiritu, Shadrielle Melijah G., Liu, Lydia Y., Rubanova, Yulia, Bhandari, Vinayak, Holgersen, Erle M., Szyca, Lesia M., Fox, Natalie S., Chua, Melvin L.K., Yamaguchi, Takafumi N., Heisler, Lawrence E., Livingstone, Julie, Wintersinger, Jeff, Yousif, Fouad, Lalonde, Emilie, Rouette, Alexandre, Salcedo, Adriana, Houlahan, Kathleen E., Li, Constance H., Huang, Vincent, Fraser, Michael, van der Kwast, Theodorus, Morris, Quaid D., Bristow, Robert G., Boutros, Paul C.
Published in Cell (03.05.2018)
Published in Cell (03.05.2018)
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Journal Article
Precision Radiotherapy: Reduction in Radiation for Oropharyngeal Cancer in the 30 ROC Trial
Riaz, Nadeem, Sherman, Eric, Pei, Xin, Schöder, Heiko, Grkovski, Milan, Paudyal, Ramesh, Katabi, Nora, Selenica, Pier, Yamaguchi, Takafumi N, Ma, Daniel, Lee, Simon K, Shah, Rachna, Kumar, Rahul, Kuo, Fengshen, Ratnakumar, Abhirami, Aleynick, Nathan, Brown, David, Zhang, Zhigang, Hatzoglou, Vaios, Liu, Lydia Y, Salcedo, Adriana, Tsai, Chiaojung J, McBride, Sean, Morris, Luc G T, Boyle, Jay, Singh, Bhuvanesh, Higginson, Daniel S, Damerla, Rama R, Paula, Arnaud da Cruz, Price, Katharine, Moore, Eric J, Garcia, Joaquin J, Foote, Robert, Ho, Alan, Wong, Richard J, Chan, Timothy A, Powell, Simon N, Boutros, Paul C, Humm, John L, Shukla-Dave, Amita, Pfister, David, Reis-Filho, Jorge S, Lee, Nancy
Published in JNCI : Journal of the National Cancer Institute (01.06.2021)
Published in JNCI : Journal of the National Cancer Institute (01.06.2021)
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Journal Article
The genomic landscape of metastatic castration-resistant prostate cancers reveals multiple distinct genotypes with potential clinical impact
van Dessel, Lisanne F., van Riet, Job, Smits, Minke, Zhu, Yanyun, Hamberg, Paul, van der Heijden, Michiel S., Bergman, Andries M., van Oort, Inge M., de Wit, Ronald, Voest, Emile E., Steeghs, Neeltje, Yamaguchi, Takafumi N., Livingstone, Julie, Boutros, Paul C., Martens, John W. M., Sleijfer, Stefan, Cuppen, Edwin, Zwart, Wilbert, van de Werken, Harmen J. G., Mehra, Niven, Lolkema, Martijn P.
Published in Nature communications (20.11.2019)
Published in Nature communications (20.11.2019)
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Journal Article
Germline BRCA2 mutations drive prostate cancers with distinct evolutionary trajectories
Taylor, Renea A., Fraser, Michael, Livingstone, Julie, Espiritu, Shadrielle Melijah G., Thorne, Heather, Huang, Vincent, Lo, Winnie, Shiah, Yu-Jia, Yamaguchi, Takafumi N., Sliwinski, Ania, Horsburgh, Sheri, Meng, Alice, Heisler, Lawrence E., Yu, Nancy, Yousif, Fouad, Papargiris, Melissa, Lawrence, Mitchell G., Timms, Lee, Murphy, Declan G., Frydenberg, Mark, Hopkins, Julia F., Bolton, Damien, Clouston, David, McPherson, John D., van der Kwast, Theodorus, Boutros, Paul C., Risbridger, Gail P., Bristow, Robert G.
Published in Nature communications (09.01.2017)
Published in Nature communications (09.01.2017)
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Journal Article
Oncolytic DNX-2401 virotherapy plus pembrolizumab in recurrent glioblastoma: a phase 1/2 trial
Nassiri, Farshad, Patil, Vikas, Yefet, Leeor S., Singh, Olivia, Liu, Jeff, Dang, Rachel M. A., Yamaguchi, Takafumi N., Daras, Mariza, Cloughesy, Timothy F., Colman, Howard, Kumthekar, Priya U., Chen, Clark C., Aiken, Robert, Groves, Morris D., Ong, Shirley S., Ramakrishna, Rohan, Vogelbaum, Michael A., Khagi, Simon, Kaley, Thomas, Melear, Jason M., Peereboom, David M., Rodriguez, Analiz, Yankelevich, Maxim, Nair, Suresh G., Puduvalli, Vinay K., Aldape, Kenneth, Gao, Andrew, López-Janeiro, Álvaro, de Andrea, Carlos E., Alonso, Marta M., Boutros, Paul, Robbins, Joan, Mason, Warren P., Sonabend, Adam M., Stupp, Roger, Fueyo, Juan, Gomez-Manzano, Candelaria, Lang, Frederick F., Zadeh, Gelareh
Published in Nature medicine (01.06.2023)
Published in Nature medicine (01.06.2023)
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Journal Article
Out-of-plane electric whiskers based on nanocarbon strain sensors for multi-directional detection
Wakabayashi, Seiji, Yamaguchi, Takafumi, Arie, Takayuki, Akita, Seiji, Takei, Kuniharu
Published in Carbon (New York) (01.03.2020)
Published in Carbon (New York) (01.03.2020)
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Journal Article
Exploring genetic suppression interactions on a global scale
van Leeuwen, Jolanda, Pons, Carles, Mellor, Joseph C., Yamaguchi, Takafumi N., Friesen, Helena, Koschwanez, John, Ušaj, Mojca Mattiazzi, Pechlaner, Maria, Takar, Mehmet, Ušaj, Matej, VanderSluis, Benjamin, Andrusiak, Kerry, Bansal, Pritpal, Baryshnikova, Anastasia, Boone, Claire E., Cao, Jessica, Cote, Atina, Gebbia, Marinella, Horecka, Gene, Horecka, Ira, Kuzmin, Elena, Legro, Nicole, Liang, Wendy, van Lieshout, Natascha, McNee, Margaret, San Luis, Bryan-Joseph, Shaeri, Fatemeh, Shuteriqi, Ermira, Sun, Song, Yang, Lu, Youn, Ji-Young, Yuen, Michael, Costanzo, Michael, Gingras, Anne-Claude, Aloy, Patrick, Oostenbrink, Chris, Murray, Andrew, Graham, Todd R., Myers, Chad L., Andrews, Brenda J., Roth, Frederick P., Boone, Charles
Published in Science (American Association for the Advancement of Science) (04.11.2016)
Published in Science (American Association for the Advancement of Science) (04.11.2016)
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Journal Article
PipeVal: light-weight extensible tool for file validation
Patel, Yash, Beshlikyan, Arpi, Jordan, Madison, Kim, Gina, Holmes, Aaron, Yamaguchi, Takafumi N, Boutros, Paul C
Published in Bioinformatics (Oxford, England) (01.02.2024)
Published in Bioinformatics (Oxford, England) (01.02.2024)
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Journal Article
Molecular Evolution of Early-Onset Prostate Cancer Identifies Molecular Risk Markers and Clinical Trajectories
Gerhauser, Clarissa, Favero, Francesco, Risch, Thomas, Simon, Ronald, Feuerbach, Lars, Assenov, Yassen, Heckmann, Doreen, Sidiropoulos, Nikos, Waszak, Sebastian M., Hübschmann, Daniel, Urbanucci, Alfonso, Girma, Etsehiwot G., Kuryshev, Vladimir, Klimczak, Leszek J., Saini, Natalie, Stütz, Adrian M., Weichenhan, Dieter, Böttcher, Lisa-Marie, Toth, Reka, Hendriksen, Josephine D., Koop, Christina, Lutsik, Pavlo, Matzk, Sören, Warnatz, Hans-Jörg, Amstislavskiy, Vyacheslav, Feuerstein, Clarissa, Raeder, Benjamin, Bogatyrova, Olga, Schmitz, Eva-Maria, Hube-Magg, Claudia, Kluth, Martina, Huland, Hartwig, Graefen, Markus, Lawerenz, Chris, Henry, Gervaise H., Yamaguchi, Takafumi N., Malewska, Alicia, Meiners, Jan, Schilling, Daniela, Reisinger, Eva, Eils, Roland, Schlesner, Matthias, Strand, Douglas W., Bristow, Robert G., Boutros, Paul C., von Kalle, Christof, Gordenin, Dmitry, Sültmann, Holger, Brors, Benedikt, Sauter, Guido, Plass, Christoph, Yaspo, Marie-Laure, Korbel, Jan O., Schlomm, Thorsten, Weischenfeldt, Joachim
Published in Cancer cell (10.12.2018)
Published in Cancer cell (10.12.2018)
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Journal Article
Cribriform and intraductal prostate cancer are associated with increased genomic instability and distinct genomic alterations
Böttcher, René, Kweldam, Charlotte F, Livingstone, Julie, Lalonde, Emilie, Yamaguchi, Takafumi N, Huang, Vincent, Yousif, Fouad, Fraser, Michael, Bristow, Robert G, van der Kwast, Theodorus, Boutros, Paul C, Jenster, Guido, van Leenders, Geert J L H
Published in BMC cancer (02.01.2018)
Published in BMC cancer (02.01.2018)
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Journal Article
Cistrome Partitioning Reveals Convergence of Somatic Mutations and Risk Variants on Master Transcription Regulators in Primary Prostate Tumors
Mazrooei, Parisa, Kron, Ken J., Zhu, Yanyun, Zhou, Stanley, Grillo, Giacomo, Mehdi, Tahmid, Ahmed, Musaddeque, Severson, Tesa M., Guilhamon, Paul, Armstrong, Nicholas Sinnott, Huang, Vincent, Yamaguchi, Takafumi N., Fraser, Michael, van der Kwast, Theodorus, Boutros, Paul C., He, Housheng Hansen, Bergman, Andries M., Bristow, Robert G., Zwart, Wilbert, Lupien, Mathieu
Published in Cancer cell (09.12.2019)
Published in Cancer cell (09.12.2019)
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Journal Article
Human‐Like Electronic Skin‐Integrated Soft Robotic Hand
Yamaguchi, Takafumi, Kashiwagi, Tsutomu, Arie, Takayuki, Akita, Seiji, Takei, Kuniharu
Published in Advanced intelligent systems (01.06.2019)
Published in Advanced intelligent systems (01.06.2019)
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Journal Article
NFTest: automated testing of Nextflow pipelines
Patel, Yash, Zhu, Chenghao, Yamaguchi, Takafumi N, Bugh, Yuan Zhe, Tian, Mao, Holmes, Aaron, Fitz-Gibbon, Sorel T, Boutros, Paul C
Published in Bioinformatics (Oxford, England) (01.02.2024)
Published in Bioinformatics (Oxford, England) (01.02.2024)
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Journal Article
Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection
Ewing, Adam D, Houlahan, Kathleen E, Hu, Yin, Ellrott, Kyle, Caloian, Cristian, Yamaguchi, Takafumi N, Bare, J Christopher, P'ng, Christine, Waggott, Daryl, Sabelnykova, Veronica Y, Kellen, Michael R, Norman, Thea C, Haussler, David, Friend, Stephen H, Stolovitzky, Gustavo, Margolin, Adam A, Stuart, Joshua M, Boutros, Paul C
Published in Nature methods (01.07.2015)
Published in Nature methods (01.07.2015)
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Journal Article
Empirical prediction model for egg production rate of a planktonic copepod, Calanus sinicus, estimated from reproductive index using formalin-preserved samples in Sagami Bay, Japan
Shimode, Shinji, Yamaguchi, Takafumi, Hidaka, Kiyotaka
Published in Plankton & benthos research (30.08.2022)
Published in Plankton & benthos research (30.08.2022)
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Journal Article
The telomere length landscape of prostate cancer
Livingstone, Julie, Shiah, Yu-Jia, Yamaguchi, Takafumi N., Heisler, Lawrence E., Huang, Vincent, Lesurf, Robert, Gebo, Tsumugi, Carlin, Benjamin, Eng, Stefan, Drysdale, Erik, Green, Jeffrey, van der Kwast, Theodorus, Bristow, Robert G., Fraser, Michael, Boutros, Paul C.
Published in Nature communications (25.11.2021)
Published in Nature communications (25.11.2021)
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Journal Article