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Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
Amir, Amnon, McDonald, Daniel, Navas-Molina, Jose A., Kopylova, Evguenia, Morton, James T., Zech Xu, Zhenjiang, Kightley, Eric P., Thompson, Luke R., Hyde, Embriette R., Gonzalez, Antonio, Knight, Rob
Published in mSystems (01.03.2017)
Published in mSystems (01.03.2017)
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Prediction of Early Childhood Caries via Spatial-Temporal Variations of Oral Microbiota
Teng, Fei, Yang, Fang, Huang, Shi, Bo, Cunpei, Xu, Zhenjiang Zech, Amir, Amnon, Knight, Rob, Ling, Junqi, Xu, Jian
Published in Cell host & microbe (09.09.2015)
Published in Cell host & microbe (09.09.2015)
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Vitamin D metabolites and the gut microbiome in older men
Thomas, Robert L., Jiang, Lingjing, Adams, John S., Xu, Zhenjiang Zech, Shen, Jian, Janssen, Stefan, Ackermann, Gail, Vanderschueren, Dirk, Pauwels, Steven, Knight, Rob, Orwoll, Eric S., Kado, Deborah M.
Published in Nature communications (26.11.2020)
Published in Nature communications (26.11.2020)
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Exposure to toxic metals triggers unique responses from the rat gut microbiota
Richardson, Joshua B., Dancy, Blair C. R., Horton, Cassandra L., Lee, Young S., Madejczyk, Michael S., Xu, Zhenjiang Zech, Ackermann, Gail, Humphrey, Gregory, Palacios, Gustavo, Knight, Rob, Lewis, John A.
Published in Scientific reports (26.04.2018)
Published in Scientific reports (26.04.2018)
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Subsistence strategies in traditional societies distinguish gut microbiomes
Obregon-Tito, Alexandra J., Tito, Raul Y., Metcalf, Jessica, Sankaranarayanan, Krithivasan, Clemente, Jose C., Ursell, Luke K., Zech Xu, Zhenjiang, Van Treuren, Will, Knight, Rob, Gaffney, Patrick M., Spicer, Paul, Lawson, Paul, Marin-Reyes, Luis, Trujillo-Villarroel, Omar, Foster, Morris, Guija-Poma, Emilio, Troncoso-Corzo, Luzmila, Warinner, Christina, Ozga, Andrew T., Lewis, Cecil M.
Published in Nature communications (25.03.2015)
Published in Nature communications (25.03.2015)
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Cancer type classification using plasma cell-free RNAs derived from human and microbes
Chen, Shanwen, Jin, Yunfan, Wang, Siqi, Xing, Shaozhen, Wu, Yingchao, Tao, Yuhuan, Ma, Yongchen, Zuo, Shuai, Liu, Xiaofan, Hu, Yichen, Chen, Hongyan, Luo, Yuandeng, Xia, Feng, Xie, Chuanming, Yin, Jianhua, Wang, Xin, Liu, Zhihua, Zhang, Ning, Zech Xu, Zhenjiang, Lu, Zhi John, Wang, Pengyuan
Published in eLife (11.07.2022)
Published in eLife (11.07.2022)
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Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information
Janssen, Stefan, McDonald, Daniel, Gonzalez, Antonio, Navas-Molina, Jose A., Jiang, Lingjing, Xu, Zhenjiang Zech, Winker, Kevin, Kado, Deborah M., Orwoll, Eric, Manary, Mark, Mirarab, Siavash, Knight, Rob
Published in mSystems (01.05.2018)
Published in mSystems (01.05.2018)
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Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies
Song, Se Jin, Amir, Amnon, Metcalf, Jessica L., Amato, Katherine R., Xu, Zhenjiang Zech, Humphrey, Greg, Knight, Rob
Published in mSystems (01.05.2016)
Published in mSystems (01.05.2016)
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Gut Microbiota Offers Universal Biomarkers across Ethnicity in Inflammatory Bowel Disease Diagnosis and Infliximab Response Prediction
Zhou, Youlian, Xu, Zhenjiang Zech, He, Yan, Yang, Yunsheng, Liu, Le, Lin, Qianyun, Nie, Yuqiang, Li, Mingsong, Zhi, Fachao, Liu, Side, Amir, Amnon, González, Antonio, Tripathi, Anupriya, Chen, Minhu, Wu, Gary D., Knight, Rob, Zhou, Hongwei, Chen, Ye
Published in mSystems (01.01.2018)
Published in mSystems (01.01.2018)
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Human Skin, Oral, and Gut Microbiomes Predict Chronological Age
Huang, Shi, Haiminen, Niina, Carrieri, Anna-Paola, Hu, Rebecca, Jiang, Lingjing, Parida, Laxmi, Russell, Baylee, Allaband, Celeste, Zarrinpar, Amir, Vázquez-Baeza, Yoshiki, Belda-Ferre, Pedro, Zhou, Hongwei, Kim, Ho-Cheol, Swafford, Austin D., Knight, Rob, Xu, Zhenjiang Zech
Published in mSystems (11.02.2020)
Published in mSystems (11.02.2020)
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PM2RA: A Framework for Detecting and Quantifying Relationship Alterations in Microbial Community
Liu, Zhi, Mi, Kai, Xu, Zhenjiang Zech, Zhang, Qiankun, Liu, Xingyin
Published in Genomics, proteomics & bioinformatics (01.02.2021)
Published in Genomics, proteomics & bioinformatics (01.02.2021)
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Open-Source Sequence Clustering Methods Improve the State Of the Art
Kopylova, Evguenia, Navas-Molina, Jose A., Mercier, Céline, Xu, Zhenjiang Zech, Mahé, Frédéric, He, Yan, Zhou, Hong-Wei, Rognes, Torbjørn, Caporaso, J. Gregory, Knight, Rob
Published in mSystems (01.01.2016)
Published in mSystems (01.01.2016)
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Systematic Evaluation of the Viable Microbiome in the Human Oral and Gut Samples with Spike-in Gram+/– Bacteria
Liu, Feng, Lu, Hui, Dong, Biao, Huang, Xiaochang, Cheng, Hongyu, Qu, Ru, Hu, Yichen, Zhong, Luyun, Guo, Zhenni, You, Yuehua, Xu, Zhenjiang Zech
Published in mSystems (27.04.2023)
Published in mSystems (27.04.2023)
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Calour: an Interactive, Microbe-Centric Analysis Tool
Xu, Zhenjiang Zech, Amir, Amnon, Sanders, Jon, Zhu, Qiyun, Morton, James T., Bletz, Molly C., Tripathi, Anupriya, Huang, Shi, McDonald, Daniel, Jiang, Lingjing, Knight, Rob
Published in mSystems (01.01.2019)
Published in mSystems (01.01.2019)
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Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems
Tripathi, Anupriya, Xu, Zhenjiang Zech, Xue, Jin, Poulsen, Orit, Gonzalez, Antonio, Humphrey, Gregory, Meehan, Michael J., Melnik, Alexey V., Ackermann, Gail, Zhou, Dan, Malhotra, Atul, Haddad, Gabriel G., Dorrestein, Pieter C., Knight, Rob
Published in mSystems (01.03.2019)
Published in mSystems (01.03.2019)
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Gut microbiota from green tea polyphenol-dosed mice improves intestinal epithelial homeostasis and ameliorates experimental colitis
Wu, Zhenhua, Huang, Shimeng, Li, Tiantian, Li, Na, Han, Dandan, Zhang, Bing, Xu, Zhenjiang Zech, Zhang, Shiyi, Pang, Jiaman, Wang, Shilan, Zhang, Guolong, Zhao, Jiangchao, Wang, Junjun
Published in Microbiome (07.09.2021)
Published in Microbiome (07.09.2021)
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Tiny microbes, enormous impacts: what matters in gut microbiome studies?
Debelius, Justine, Song, Se Jin, Vazquez-Baeza, Yoshiki, Xu, Zhenjiang Zech, Gonzalez, Antonio, Knight, Rob
Published in Genome Biology (19.10.2016)
Published in Genome Biology (19.10.2016)
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