Cell segmentation in imaging-based spatial transcriptomics
Petukhov, Viktor, Xu, Rosalind J, Soldatov, Ruslan A, Cadinu, Paolo, Khodosevich, Konstantin, Moffitt, Jeffrey R, Kharchenko, Peter V
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Published in Nature biotechnology (01.03.2022)
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Charting the cellular biogeography in colitis reveals fibroblast trajectories and coordinated spatial remodeling
Cadinu, Paolo, Sivanathan, Kisha N, Misra, Aditya, Xu, Rosalind J, Mangani, Davide, Yang, Evan, Rone, Joseph M, Tooley, Katherine, Kye, Yoon-Chul, Bod, Lloyd, Geistlinger, Ludwig, Lee, Tyrone, Ono, Noriaki, Wang, Gang, Sanmarco, Liliana, Quintana, Francisco J, Anderson, Ana C, Kuchroo, Vijay K, Moffitt, Jeffrey R, Nowarski, Roni
Published in bioRxiv (09.05.2023)
Published in bioRxiv (09.05.2023)
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Accurate single-molecule spot detection for image-based spatial transcriptomics with weakly supervised deep learning
Laubscher, Emily, Wang, Xuefei, Razin, Nitzan, Dougherty, Tom, Xu, Rosalind, Lincoln Ombelets, Pao, Edward, Moffitt, Jeffrey, Yue, Yisong, Van Valen, David Ashley
Published in bioRxiv (05.02.2024)
Published in bioRxiv (05.02.2024)
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Paper
Accurate single-molecule spot detection for image-based spatial transcriptomics with weakly supervised deep learning
Laubscher, Emily, Wang, Xuefei Julie, Razin, Nitzan, Dougherty, Tom, Xu, Rosalind J, Ombelets, Lincoln, Pao, Edward, Graf, William, Moffitt, Jeffrey R, Yue, Yisong, Van Valen, David
Published in bioRxiv : the preprint server for biology (05.02.2024)
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Published in bioRxiv : the preprint server for biology (05.02.2024)
Journal Article
Charting the cellular biogeography in colitis reveals fibroblast trajectories and coordinated spatial remodeling
Cadinu, Paolo, Sivanathan, Kisha N, Misra, Aditya, Xu, Rosalind J, Mangani, Davide, Yang, Evan, Rone, Joseph M, Tooley, Katherine, Kye, Yoon-Chul, Bod, Lloyd, Geistlinger, Ludwig, Lee, Tyrone, Ono, Noriaki, Wang, Gang, Sanmarco, Liliana, Quintana, Francisco J, Anderson, Ana C, Kuchroo, Vijay K, Moffitt, Jeffrey R, Nowarski, Roni
Published in bioRxiv : the preprint server for biology (09.05.2023)
Get more information
Published in bioRxiv : the preprint server for biology (09.05.2023)
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