Pericentromeric satellite repeat expansions through RNA-derived DNA intermediates in cancer
Bersani, Francesca, Lee, Eunjung, Kharchenko, Peter V., Xu, Andrew W., Liu, Mingzhu, Xega, Kristina, MacKenzie, Olivia C., Brannigan, Brian W., Wittner, Ben S., Jung, Hyunchul, Ramaswamy, Sridhar, Park, Peter J., Maheswaran, Shyamala, Ting, David T., Haber, Daniel A.
Published in Proceedings of the National Academy of Sciences - PNAS (08.12.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (08.12.2015)
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Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma
Ceccarelli, Michele, Salama, Sofie R., Manyam, Ganiraju, Zoppoli, Pietro, Grifford, Mia, Rao, Arvind, Lau, Ching C., Huse, Jason, Zheng, Siyuan, Hess, Kenneth, Rao, Ganesh, Beroukhim, Rameen, Akbani, Rehan, Wrensch, Margaret, Haussler, David, Aldape, Kenneth D., Anjum, Samreen, Balu, Saianand, Barnett, Gene, Black, Keith L., Bristow, Christopher A., Chen, Qing-Rong, Cho, Juok, Chuah, Eric, Chudamani, Sudha, Cohen, Mark L., Couce, Marta, Davidsen, Tanja, Davis, Amy, Elder, J. Bradley, Eschbacher, Jennifer M., Fehrenbach, Ashley, Ferguson, Martin, Fuller, Gregory, Fulop, Jordonna, Garofano, Luciano, Gastier-Foster, Julie M., Gehlenborg, Nils, Gerken, Mark, Gibson, William J., Hadjipanayis, Angela, Hayes, D. Neil, Hilty, Joe, Hoyle, Alan P., Jones, Corbin D., Jones, Steven J.M., Ju, Zhenlin, Kastl, Alison, Kendler, Ady, Kucherlapati, Raju, Lichtenberg, Tara M., Lin, Pei, Ljubimova, Julia Y., Lu, Yiling, Ma, Yussanne, Maglinte, Dennis T., Marra, Marco A., Meng, Shaowu, Miller, C. Ryan, Mills, Gordon B., Mose, Lisle E., Naska, Theresa, Noble, Michael S., Noss, Ardene, Palmer, Cheryl, Parfenov, Michael, Parker, Joel S., Perou, Charles M., Pihl, Todd, Protopopov, Alexei, Ramirez, Nilsa C., Saksena, Gordon, Schein, Jacqueline E., Shen, Hui, Shi, Yan, Shimmel, Kristen, Sicotte, Hugues, Sifri, Suzanne, Silva, Tiago, Singh, Rosy, Song, Xingzhi, Souza, Camila, Sun, Huandong, Sun, Charlie, Tang, Jiabin, Trevisan, Felipe Amstalden, Van Den Berg, David J., Voet, Doug, Wang, Zhining, Weinstein, John N., Weisenberger, Daniel J., Wilkerson, Matthew D., Williams, Felicia, Wise, Lisa, Xu, Andrew W., Yang, Lixing, Zack, Travis I., Zhang, Jianhua, Zhang, Wei, Zmuda, Erik
Published in Cell (28.01.2016)
Published in Cell (28.01.2016)
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Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas
Brat, Daniel J, Verhaak, Roel G W, Yung, W K Alfred, Miller, C Ryan, Robertson, A Gordon, Noushmehr, Houtan, Cherniack, Andrew D, Poisson, Laila M, Colen, Rivka R, Flanders, Adam E, Grifford, Mia, Iavarone, Antonio, Joseph, Isaac, Van Meir, Erwin G, von Deimling, Andreas, Lau, Kevin, Mallery, David, Sherman, Mark, Lichtenberg, Tara M, Ramirez, Nilsa C, Demchok, John A, Hutter, Carolyn M, Mills Shaw, Kenna R, Wang, Zhining, Baboud, Julien, Jensen, Mark A, Wan, Yunhu, Wu, Ye, Auman, J Todd, Balu, Saianand, Carlsen, Rebecca, Carter, Scott, Chu, Andy, Coetzee, Simon G, Gibbs, Richard, Hayes, D Neil, Lichtenstein, Lee, Mahadeshwar, Harshad S, Mayo, Michael, Meng, Shaowu, Moore, Richard A, Mose, Lisle E, Perou, Charles M, Seth, Sahil, Shen, Hui, Sipahimalani, Payal, Tabak, Barbara, Tam, Angela, Thiessen, Nina, Triche, Jr, Timothy, Waring, Scot, Weisenberger, Daniel J, Wilkerson, Matthew D, Wong, Tina, Wu, Junyuan, Xi, Liu, Xu, Andrew W, Yang, Lixing, Zhang, Jianhua, Benz, Chris, Bernard, Brady, Gao, JianJiong, Ju, Zhenlin, Katzman, Sol, Lawrence, Michael S, Ling, Shiyun, Lu, Yiling, Sanborn, Zack, Sander, Chris, Schultz, Nikolaus, Senbabaoglu, Yasin, Shmulevich, Ilya, Sinha, Rileen, Taylor, Barry S, Weinstein, John N, Zou, Lihua, Raghunathan, Aditya, Aziz, Dina, Boice, Lori, Brewer, Cathy, Chan, Timothy A, DiMeco, Francesco, Finocchiaro, Gaetano, Friedman, William, Kendler, Ady, Lipp, Eric, Mandt, Randy, McGraw, Mary, McPherson, Christopher, Perin, Alessandro, Pollo, Bianca, Shurkhay, Vsevolod, Staugaitis, Susan M, Steele, Ruth, Thorne, Leigh, Tirapelli, Daniela P C, Wolinsky, Yingli, Stewart, Chip, Grimsby, Jonna L, Zhang, Jianan
Published in The New England journal of medicine (25.06.2015)
Published in The New England journal of medicine (25.06.2015)
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Integrated Genomic Characterization of Papillary Thyroid Carcinoma
Akbani, Rehan, Aksoy, B. Arman, Ally, Adrian, Balasundaram, Miruna, Bernard, Brady, Beroukhim, Rameen, Black, Aaron D., Bodenheimer, Tom, Bowen, Jay, Bristow, Christopher A., Brookens, Robin, Buda, Elizabeth, Butterfield, Yaron S.N., Carty, Sally E., Chin, Lynda, Chuah, Eric, Cibulskis, Kristian, Clarke, Amanda, Clayman, Gary L., Cope, Leslie, Copland, John A., Davidsen, Tanja, Dhir, Rajiv, Dresdner, Gideon, Eldridge, Jonathan, Eley, Greg, El-Naggar, Adel K., Fisher, Sheila, Garraway, Levi A., Getz, Gad, Gehlenborg, Nils, Gibbs, Richard A., Gomez-Hernandez, Karen, Guin, Ranabir, Harper, Hollie A., Heiman, David I., Herman, James G., Hoadley, Katherine A., Hofree, Matan, Holt, Robert A., Hoyle, Alan P., Huang, Franklin W., Ideker, Trey, Kasaian, Katayoon, Khuri, Fadlo R., Kramer, Roger, Ladanyi, Marc, Lander, Eric, Lawrence, Michael S., Lee, Darlene, Leraas, Kristen M., Ling, Shiyun, Liu, Wenbin, LiVolsi, Virginia A., Ma, Yussanne, Mahadeshwar, Harshad S., Mills, Gordon, Mose, Lisle E., Murray, Bradley A., Noble, Michael S., Owonikoko, Taofeek K., Pantazi, Angeliki, Pedamallu, Chandra Sekhar, Perou, Charles M., Prins, Jan F., Ren, Xiaojia, Reynolds, Sheila M., Robertson, A. Gordon, Rosenberg, Mara W., Rosenthal, Matthew, Schein, Jacqueline E., Seethala, Raja R., Shaw, Kenna R. Mills, Sheth, Margi, Shi, Yan, Sica, Gabriel L., Sipahimalani, Payal, Smallridge, Robert C., Sofia, Heidi J., Stuart, Joshua M., Sumer, S. Onur, Tam, Angela, Tarnuzzer, Roy, Thiessen, Nina, Thorne, Leigh, Thorsson, Vésteinn, Vandin, Fabio, Veluvolu, Umadevi, Vinco, Michelle, Voet, Doug, Weinhold, Nils, Wheeler, David, Wilson, Jocelyn, Williams, Michelle, Xu, Andrew W., Yang, Liming, Yang, Lixing, Zeng, Dong, Zhang, Jiashan (Julia), Zmuda, Erik
Published in Cell (23.10.2014)
Published in Cell (23.10.2014)
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The Molecular Taxonomy of Primary Prostate Cancer
Abeshouse, Adam, Akbani, Rehan, Ally, Adrian, Andry, Christopher D., Auman, J. Todd, Beroukhim, Rameen, Boutros, Paul C., Bradley, Robert K., Bristow, Christopher A., Bryce, Alan H., Butterfield, Yaron S.N., Button, Michael, Carroll, Peter R., Carter, Scott L., Carver, Brett S., Chan, June M., Chen, Yu, Cherniack, Andrew D., Cibulskis, Kristian, Ciriello, Giovanni, Costello, Anthony J., Dvinge, Heidi, Felau, Ina, Gardner, Johanna, Gehlenborg, Nils, Graefen, Markus, Guin, Ranabir, Gupta, Manaswi, Hadjipanayis, Angela, Hayes, D. Neil, Heiman, David I., Hoadley, Katherine A., Holbrook, Andrea H., Hoyle, Alan P., Huang, Mei, Ittmann, Michael, Kahles, Andre, Kane, Christopher J., Kerger, Michael, Klein, Robert J., Lai, Phillip H., Laird, Peter W., Lander, Eric S., Latour, Mathieu, Lawrence, Michael S., Lau, Kevin, LeBien, Tucker, Leraas, Kristen M., Lin, Pei, Linehan, W. Marston, Lolla, Laxmi, Longacre, Teri, Lu, Yiling, Mallery, David, Mariamidze, Armaz, Meng, Shaowu, Meyerson, Matthew, Mieczkowski, Piotr A., Mills, Gordon B., Minner, Sarah, Morrison, Carl, Naresh, Rashi, Nelson, Joel, Nelson, Peter S., Newton, Yulia, Noushmehr, Houtan, Parfenov, Michael, Park, Peter J., Piché, Alain, Rathmell, W. Kimryn, Reynolds, Sheila M., Roach, Jeffrey, Robertson, A. Gordon, Sadeghi, Sara, Scarlata, Eleonora, Shen, Ronglai, Shi, Yan, Shih, Juliann, Skelly, Tara, Sofia, Heidi J., Stewart, Chip, Sun, Charlie, Tan, Donghui, Taylor, Barry S., Teebagy, Patrick, Têtu, Bernard, Thiessen, Nina, Tirapelli, Daniela P., Tomlins, Scott A., Trevisan, Felipe Amstalden, True, Lawrence D., Weinhold, Nils, Wilkerson, Matthew D., Wu, Junyuan, Wu, Ye, Xu, Andrew W., Yadav, Shalini S., Yang, Lixing, Yena, Peggy, Zeng, Thomas
Published in Cell (05.11.2015)
Published in Cell (05.11.2015)
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The Somatic Genomic Landscape of Chromophobe Renal Cell Carcinoma
Davis, Caleb F., Ricketts, Christopher J., Wang, Min, Kim, Sang Cheol, Hacker, Kathryn E., Bhanot, Gyan, Gordenin, Dmitry A., Biehl, Michael, Kaipparettu, Benny A., Donehower, Lawrence A., Tamboli, Pheroze, Hsieh, James J., Hakimi, A. Ari, Creighton, Chad J., Davis, Caleb F., Morgan, Margaret, Donehower, Lawrence A., Wheeler, David A., Cherniack, Andrew D., Choueiri, Toni K., Kwiatkowski, David J., Hakimi, A. Ari, Ricketts, Christopher, Rathmell, W. Kimryn, Smith, Angela B., Wallen, Eric M., Muzny, Donna, Xi, Liu, Reid, Jeffrey G., Downs, Brittany, Doddapaneni, Harsha, Lewis, Lora, English, Adam, Meng, Qingchang, Kovar, Christie, Hale, Walker, Sougnez, Carrie, Getz, Gad, Beroukhim, Rameen, Gabriel, Stacey B., Balasundaram, Miruna, Dhalla, Noreen, Guin, Ranabir, Holt, Robert A., Lee, Darlene, Lim, Emilia, Sipahimalani, Payal, Thiessen, Nina, Jones, Steven J.M., Hoadley, Katherine A., Mieczkowski, Piotr A., Roach, Jeffrey, Wu, Junyuan, Hoyle, Alan P., Balu, Saianand, Hayes, D. Neil, Bootwalla, Moiz S., Chen, Fengju, Noble, Michael S., DiCara, Daniel, Zou, Lihua, Chin, Lynda, Protopopov, Alexei, Song, Xingzhi, Lee, Eunjung, Luquette, Lovelace J., Lee, Semin, Xu, Andrew W., Kucherlapati, Raju, Park, Peter J., Fargo, David, Choi, Yoon-La, Lee, June-Koo, Akbani, Rehan, Weinstein, John N., Haussler, David, Lichtenberg, Tara M., Leraas, Kristen M., Kaelin, William G., Vocke, Cathy, Worrell, Robert, Merino, Maria, Spellman, Paul T., Cheville, John, Baboud, Julien, Velaga, Sudhakar, Liu, Jia, Chudamani, Sudha, Wu, Ye, Sheth, Margi, Mills Shaw, Kenna R., Yang, Liming, Wang, Zhining, Hutter, Carolyn M., Sofia, Heidi J., Kucherlapati, Raju, Park, Woong-Yang, Robertson, A. Gordon, Kwiatkowski, David J., Park, Peter J.
Published in Cancer cell (08.09.2014)
Published in Cancer cell (08.09.2014)
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Heuristics for the inversion median problem
Rajan, Vaibhav, Xu, Andrew Wei, Lin, Yu, Swenson, Krister M, Moret, Bernard M E
Published in BMC bioinformatics (18.01.2010)
Published in BMC bioinformatics (18.01.2010)
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