ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference
Steenwyk, Jacob L, Buida, 3rd, Thomas J, Li, Yuanning, Shen, Xing-Xing, Rokas, Antonis
Published in PLoS biology (02.12.2020)
Published in PLoS biology (02.12.2020)
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Journal Article
Contentious relationships in phylogenomic studies can be driven by a handful of genes
Shen, Xing-Xing, Hittinger, Chris Todd, Rokas, Antonis
Published in Nature ecology & evolution (10.04.2017)
Published in Nature ecology & evolution (10.04.2017)
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Journal Article
Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts
Steenwyk, Jacob L, Opulente, Dana A, Kominek, Jacek, Shen, Xing-Xing, Zhou, Xiaofan, Labella, Abigail L, Bradley, Noah P, Eichman, Brandt F, Čadež, Neža, Libkind, Diego, DeVirgilio, Jeremy, Hulfachor, Amanda Beth, Kurtzman, Cletus P, Hittinger, Chris Todd, Rokas, Antonis
Published in PLoS biology (21.05.2019)
Published in PLoS biology (21.05.2019)
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Journal Article
An investigation of irreproducibility in maximum likelihood phylogenetic inference
Shen, Xing-Xing, Li, Yuanning, Hittinger, Chris Todd, Chen, Xue-xin, Rokas, Antonis
Published in Nature communications (30.11.2020)
Published in Nature communications (30.11.2020)
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Journal Article
Rooting the Animal Tree of Life
Li, Yuanning, Shen, Xing-Xing, Evans, Benjamin, Dunn, Casey W, Rokas, Antonis
Published in Molecular biology and evolution (01.10.2021)
Published in Molecular biology and evolution (01.10.2021)
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Journal Article
PhyloFisher: A phylogenomic package for resolving eukaryotic relationships
Tice, Alexander K., Žihala, David, Pánek, Tomáš, Jones, Robert E., Salomaki, Eric D., Nenarokov, Serafim, Burki, Fabien, Eliáš, Marek, Eme, Laura, Roger, Andrew J., Rokas, Antonis, Shen, Xing-Xing, Strassert, Jürgen F. H., Kolísko, Martin, Brown, Matthew W.
Published in PLoS biology (06.08.2021)
Published in PLoS biology (06.08.2021)
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Journal Article
Evolutionary instability of CUG-Leu in the genetic code of budding yeasts
Krassowski, Tadeusz, Coughlan, Aisling Y., Shen, Xing-Xing, Zhou, Xiaofan, Kominek, Jacek, Opulente, Dana A., Riley, Robert, Grigoriev, Igor V., Maheshwari, Nikunj, Shields, Denis C., Kurtzman, Cletus P., Hittinger, Chris Todd, Rokas, Antonis, Wolfe, Kenneth H.
Published in Nature communications (14.05.2018)
Published in Nature communications (14.05.2018)
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Journal Article
Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum
Shen, Xing-Xing, Opulente, Dana A., Kominek, Jacek, Zhou, Xiaofan, Steenwyk, Jacob L., Buh, Kelly V., Haase, Max A.B., Wisecaver, Jennifer H., Wang, Mingshuang, Doering, Drew T., Boudouris, James T., Schneider, Rachel M., Langdon, Quinn K., Ohkuma, Moriya, Endoh, Rikiya, Takashima, Masako, Manabe, Ri-ichiroh, Čadež, Neža, Libkind, Diego, Rosa, Carlos A., DeVirgilio, Jeremy, Hulfachor, Amanda Beth, Groenewald, Marizeth, Kurtzman, Cletus P., Hittinger, Chris Todd, Rokas, Antonis
Published in Cell (29.11.2018)
Published in Cell (29.11.2018)
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Journal Article
HGT is widespread in insects and contributes to male courtship in lepidopterans
Li, Yang, Liu, Zhiguo, Liu, Chao, Shi, Zheyi, Pang, Lan, Chen, Chuzhen, Chen, Yun, Pan, Ronghui, Zhou, Wenwu, Chen, Xue-xin, Rokas, Antonis, Huang, Jianhua, Shen, Xing-Xing
Published in Cell (04.08.2022)
Published in Cell (04.08.2022)
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Journal Article
A General Approach to Design Dual Ratiometric Fluorescent and Photoacoustic Probes for Quantitatively Visualizing Tumor Hypoxia Levels In Vivo
Zhang, Shuping, Chen, Hua, Wang, Liping, Qin, Xue, Jiang, Bang‐Ping, Ji, Shi‐Chen, Shen, Xing‐Can, Liang, Hong
Published in Angewandte Chemie International Edition (07.02.2022)
Published in Angewandte Chemie International Edition (07.02.2022)
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Journal Article
Recent Advances in Carbon Nanomaterials for Cancer Phototherapy
Jiang, Bang‐Ping, Zhou, Bo, Lin, Zhaoxing, Liang, Hong, Shen, Xing‐Can
Published in Chemistry : a European journal (15.03.2019)
Published in Chemistry : a European journal (15.03.2019)
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Journal Article
Exosomes Derived from Mesenchymal Stem Cells Rescue Myocardial Ischaemia/Reperfusion Injury by Inducing Cardiomyocyte Autophagy Via AMPK and Akt Pathways
Liu, Liang, Jin, Xian, Hu, Cui-Fen, Li, Rong, Zhou, Zhong’e, Shen, Cheng-Xing
Published in Cellular physiology and biochemistry (01.01.2017)
Published in Cellular physiology and biochemistry (01.01.2017)
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Journal Article
Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage
Gonçalves, Carla, Wisecaver, Jennifer H, Kominek, Jacek, Oom, Madalena Salema, Leandro, Maria José, Shen, Xing-Xing, Opulente, Dana A, Zhou, Xiaofan, Peris, David, Kurtzman, Cletus P, Hittinger, Chris Todd, Rokas, Antonis, Gonçalves, Paula
Published in eLife (12.04.2018)
Published in eLife (12.04.2018)
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Journal Article
How has horizontal gene transfer shaped the evolution of insect genomes?
Liu, Chao, Li, Yang, Chen, Yun, Chen, Xue‐xin, Huang, Jianhua, Rokas, Antonis, Shen, Xing‐Xing
Published in Environmental microbiology (01.03.2023)
Published in Environmental microbiology (01.03.2023)
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Journal Article
Surface‐Enhanced Raman Probes Based on Gold Nanomaterials for in vivo Diagnosis and Imaging
Wen, Changchun, Wang, Liping, Liu, Li, Shen, Xing‐Can, Chen, Hua
Published in Chemistry, an Asian journal (01.04.2022)
Published in Chemistry, an Asian journal (01.04.2022)
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Journal Article
Recent progress in metal complexes functionalized nanomaterials for photodynamic therapy
Wei, Fangmian, Chen, Zhuoli, Shen, Xing-Can, Ji, Liangnian, Chao, Hui
Published in Chemical communications (Cambridge, England) (06.06.2023)
Published in Chemical communications (Cambridge, England) (06.06.2023)
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