IBS: an illustrator for the presentation and visualization of biological sequences
Liu, Wenzhong, Xie, Yubin, Ma, Jiyong, Luo, Xiaotong, Nie, Peng, Zuo, Zhixiang, Lahrmann, Urs, Zhao, Qi, Zheng, Yueyuan, Zhao, Yong, Xue, Yu, Ren, Jian
Published in Bioinformatics (15.10.2015)
Published in Bioinformatics (15.10.2015)
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Journal Article
GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs
Zhao, Qi, Xie, Yubin, Zheng, Yueyuan, Jiang, Shuai, Liu, Wenzhong, Mu, Weiping, Liu, Zexian, Zhao, Yong, Xue, Yu, Ren, Jian
Published in Nucleic acids research (01.07.2014)
Published in Nucleic acids research (01.07.2014)
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Journal Article
Regenerative lineages and immune-mediated pruning in lung cancer metastasis
Laughney, Ashley M., Hu, Jing, Campbell, Nathaniel R., Bakhoum, Samuel F., Setty, Manu, Lavallée, Vincent-Philippe, Xie, Yubin, Masilionis, Ignas, Carr, Ambrose J., Kottapalli, Sanjay, Allaj, Viola, Mattar, Marissa, Rekhtman, Natasha, Xavier, Joao B., Mazutis, Linas, Poirier, John T., Rudin, Charles M., Pe’er, Dana, Massagué, Joan
Published in Nature medicine (01.02.2020)
Published in Nature medicine (01.02.2020)
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Journal Article
Signatures of plasticity, metastasis, and immunosuppression in an atlas of human small cell lung cancer
Chan, Joseph M., Quintanal-Villalonga, Álvaro, Gao, Vianne Ran, Xie, Yubin, Allaj, Viola, Chaudhary, Ojasvi, Masilionis, Ignas, Egger, Jacklynn, Chow, Andrew, Walle, Thomas, Mattar, Marissa, Yarlagadda, Dig V.K., Wang, James L., Uddin, Fathema, Offin, Michael, Ciampricotti, Metamia, Qeriqi, Besnik, Bahr, Amber, de Stanchina, Elisa, Bhanot, Umesh K., Lai, W. Victoria, Bott, Matthew J., Jones, David R., Ruiz, Arvin, Baine, Marina K., Li, Yanyun, Rekhtman, Natasha, Poirier, John T., Nawy, Tal, Sen, Triparna, Mazutis, Linas, Hollmann, Travis J., Pe'er, Dana, Rudin, Charles M.
Published in Cancer cell (08.11.2021)
Published in Cancer cell (08.11.2021)
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Journal Article
GPS-Lipid: a robust tool for the prediction of multiple lipid modification sites
Xie, Yubin, Zheng, Yueyuan, Li, Hongyu, Luo, Xiaotong, He, Zhihao, Cao, Shuo, Shi, Yi, Zhao, Qi, Xue, Yu, Zuo, Zhixiang, Ren, Jian
Published in Scientific reports (16.06.2016)
Published in Scientific reports (16.06.2016)
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Journal Article
Identification of the SARS-unique domain of SARS-CoV-2 as an antiviral target
Qin, Bo, Li, Ziheng, Tang, Kaiming, Wang, Tongyun, Xie, Yubin, Aumonier, Sylvain, Wang, Meitian, Yuan, Shuofeng, Cui, Sheng
Published in Nature communications (06.07.2023)
Published in Nature communications (06.07.2023)
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Journal Article
Multiomic Analysis Reveals Comprehensive Tumor Heterogeneity and Distinct Immune Subtypes in Multifocal Intrahepatic Cholangiocarcinoma
Chen, Shuling, Xie, Yubin, Cai, Yuhong, Hu, Huanjing, He, Minghui, Liu, Lijuan, Liao, Changyi, Wang, Yuanqi, Wang, Jianping, Ren, Xiaoxue, Zeng, Qianwen, Peng, Hong, Shen, Shunli, Li, Shaoqiang, Li, Dongming, Lai, Jiaming, Peng, Baogang, Ren, Jian, Kuang, Ming, Peng, Sui
Published in Clinical cancer research (01.05.2022)
Published in Clinical cancer research (01.05.2022)
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Journal Article
Motivation to interaction media: The impact of automation trust and self-determination theory on intention to use the new interaction technology in autonomous vehicles
Xie, Yubin, Zhou, Ronggang, Chan, Alan Hoi Shou, Jin, Mingyu, Qu, Miao
Published in Frontiers in psychology (08.02.2023)
Published in Frontiers in psychology (08.02.2023)
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Journal Article
Single-cell RNA analysis to identify five cytokines signaling in immune-related genes for melanoma survival prognosis
Pu, Zuhui, Zhao, Qing, Chen, Jiaqun, Xie, Yubin, Mou, Lisha, Zha, Xushan
Published in Frontiers in immunology (21.03.2023)
Published in Frontiers in immunology (21.03.2023)
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Journal Article
DeepNitro: Prediction of Protein Nitration and Nitrosylation Sites by Deep Learning
Xie, Yubin, Luo, Xiaotong, Li, Yupeng, Chen, Li, Ma, Wenbin, Huang, Junjiu, Cui, Jun, Zhao, Yong, Xue, Yu, Zuo, Zhixiang, Ren, Jian
Published in Genomics, proteomics & bioinformatics (01.08.2018)
Published in Genomics, proteomics & bioinformatics (01.08.2018)
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Journal Article
The neurotransmitter calcitonin gene-related peptide shapes an immunosuppressive microenvironment in medullary thyroid cancer
Hou, Yingtong, Lin, Bo, Xu, Tianyi, Jiang, Juan, Luo, Shuli, Chen, Wanna, Chen, Xinwen, Wang, Yuanqi, Liao, Guanrui, Wang, Jianping, Zhang, Jiayuan, Li, Xuyang, Xiang, Xiao, Xie, Yubin, Wang, Ji, Peng, Sui, Lv, Weiming, Liu, Yihao, Xiao, Haipeng
Published in Nature communications (19.07.2024)
Published in Nature communications (19.07.2024)
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Journal Article
Exploring COVID-19 causal genes through disease-specific Cis-eQTLs
Zhang, Sainan, Wang, Ping, Shi, Lei, Wang, Chao, Zhu, Zijun, Qi, Changlu, Xie, Yubin, Yuan, Shuofeng, Cheng, Liang, Yin, Xin, Zhang, Xue
Published in Virus research (01.04.2024)
Published in Virus research (01.04.2024)
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Journal Article
PMI-controlled mannose metabolism and glycosylation determines tissue tolerance and virus fitness
Liang, Ronghui, Ye, Zi-Wei, Qin, Zhenzhi, Xie, Yubin, Yang, Xiaomeng, Sun, Haoran, Du, Qiaohui, Luo, Peng, Tang, Kaiming, Hu, Bodan, Cao, Jianli, Wong, Xavier Hoi-Leong, Ling, Guang-Sheng, Chu, Hin, Shen, Jiangang, Yin, Feifei, Jin, Dong-Yan, Chan, Jasper Fuk-Woo, Yuen, Kwok-Yung, Yuan, Shuofeng
Published in Nature communications (08.03.2024)
Published in Nature communications (08.03.2024)
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Journal Article
Effect of Different Adjuvants on Immune Responses Elicited by Protein-Based Subunit Vaccines against SARS-CoV-2 and Its Delta Variant
Zhang, Naru, Ji, Qianting, Liu, Zezhong, Tang, Kaiming, Xie, Yubin, Li, Kangchen, Zhou, Jie, Li, Sisi, Shang, Haotian, Shi, Zecan, Zheng, Tianyu, Yao, Jiawei, Lu, Lu, Yuan, Shuofeng, Jiang, Shibo
Published in Viruses (28.02.2022)
Published in Viruses (28.02.2022)
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Journal Article
DeepPhagy: a deep learning framework for quantitatively measuring autophagy activity in Saccharomyces cerevisiae
Zhang, Ying, Xie, Yubin, Liu, Wenzhong, Deng, Wankun, Peng, Di, Wang, Chenwei, Xu, Haodong, Ruan, Chen, Deng, Yongjie, Guo, Yaping, Lu, Chenjun, Yi, Cong, Ren, Jian, Xue, Yu
Published in Autophagy (02.04.2020)
Published in Autophagy (02.04.2020)
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Journal Article
Alisol B 23-acetate broadly inhibits coronavirus through blocking virus entry and suppresses proinflammatory T cells responses for the treatment of COVID-19
Du, Qiaohui, Liang, Ronghui, Wu, Meiling, Yang, Minxiao, Xie, Yubin, Liu, Qing, Tang, Kaiming, Lin, Xiang, Yuan, Shuofeng, Shen, Jiangang
Published in Journal of advanced research (01.08.2024)
Published in Journal of advanced research (01.08.2024)
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Journal Article
BioTreasury: a community-based repository enabling indexing and rating of bioinformatics tools
Zhao, Qi, Zhou, Xin, Wu, Jingxing, Cai, Jieyi, Bao, Xiaoqiong, Tang, Lin, Wang, Chaoye, Liu, Chunlei, Wang, Yukai, Teng, Yuyan, Zheng, Mohan, Mu, Weiping, Zuo, Zhixiang, Xie, Yubin, Luo, Xiaotong, Ren, Jian
Published in Science China. Life sciences (01.02.2024)
Published in Science China. Life sciences (01.02.2024)
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Journal Article
U1RNP/lncRNA/Transcription Cycle Axis Promotes Tumorigenesis of Hepatocellular Carcinoma
Li, Shun, Zhang, Shuaiyin, Huang, Mingle, Hu, Huanjing, Xie, Yubin
Published in Diagnostics (Basel) (03.05.2022)
Published in Diagnostics (Basel) (03.05.2022)
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Journal Article